Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_D01
(309 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 29 0.87
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 29 0.87
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 29 0.87
Z83231-3|CAB05751.1| 247|Caenorhabditis elegans Hypothetical pr... 28 1.2
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical... 26 4.7
Z82285-7|CAB05301.1| 548|Caenorhabditis elegans Hypothetical pr... 25 8.1
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 25 8.1
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 25 8.1
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 25 8.1
U39648-4|AAK39290.1| 220|Caenorhabditis elegans Hypothetical pr... 25 8.1
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 25 8.1
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 25 8.1
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 25 8.1
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 25 8.1
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 31 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 168
LP SLH+++Q Y + T + S+YND K D Y+ + S
Sbjct: 19 LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 31 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 168
LP SLH+++Q Y + T + S+YND K D Y+ + S
Sbjct: 19 LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 28.7 bits (61), Expect = 0.87
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 31 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 168
LP SLH+++Q Y + T + S+YND K D Y+ + S
Sbjct: 19 LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63
>Z83231-3|CAB05751.1| 247|Caenorhabditis elegans Hypothetical
protein F57G9.3 protein.
Length = 247
Score = 28.3 bits (60), Expect = 1.2
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -2
Query: 206 EFFHYYCCCW 177
EF+H+Y CCW
Sbjct: 161 EFYHFYMCCW 170
>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
protein F25E5.1 protein.
Length = 1062
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 220 YEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVN 41
Y I+ FI G+ W I N + H+ R +T+ W + ++R R+ + N
Sbjct: 897 YPIMTQRFIAQYRPGIILWHRSPIPNPQI--HHVRIITEMWPKNDFERTTRIPRKKFIKN 954
Query: 40 GL 35
G+
Sbjct: 955 GI 956
>Z82285-7|CAB05301.1| 548|Caenorhabditis elegans Hypothetical
protein T28F3.8 protein.
Length = 548
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 199 FIITAAVGLPGWGLYHIHN 143
F IT +VGL GWG ++ N
Sbjct: 269 FTITISVGLNGWGNFNYTN 287
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -2
Query: 302 IRPADGHCYFPNENTCVTWDTRI----*NNVVRNSSEFFHYYCCCW 177
IR GHC+ E V ++ R+ +++ S +CC W
Sbjct: 12 IRQQSGHCFIMGERNLVLYEKRMFQYKASSLYSGSERDGFIHCCSW 57
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -2
Query: 302 IRPADGHCYFPNENTCVTWDTRI----*NNVVRNSSEFFHYYCCCW 177
IR GHC+ E V ++ R+ +++ S +CC W
Sbjct: 12 IRQQSGHCFIMGERNLVLYEKRMFQYKASSLYSGSERDGFIHCCSW 57
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Frame = -2
Query: 302 IRPADGHCYFPNENTCVTWDTRI----*NNVVRNSSEFFHYYCCCW 177
IR GHC+ E V ++ R+ +++ S +CC W
Sbjct: 60 IRQQSGHCFIMGERNLVLYEKRMFQYKASSLYSGSERDGFIHCCSW 105
>U39648-4|AAK39290.1| 220|Caenorhabditis elegans Hypothetical
protein T13C5.4 protein.
Length = 220
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 94 RALYQRDMRLTGNPYE 47
RA Y+R+ + TG+PYE
Sbjct: 96 RAKYRREQKQTGHPYE 111
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 179 NSSSNNEKTRKNFVPHYSKFSYPKLHKCFRSENNSDHR 292
+ + NN++ R+ P YS+ S F SENN +H+
Sbjct: 949 HKAPNNDEGREFQNPLYSRQSVFPDSDAFSSENNGNHQ 986
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 179 NSSSNNEKTRKNFVPHYSKFSYPKLHKCFRSENNSDHR 292
+ + NN++ R+ P YS+ S F SENN +H+
Sbjct: 949 HKAPNNDEGREFQNPLYSRQSVFPDSDAFSSENNGNHQ 986
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 179 NSSSNNEKTRKNFVPHYSKFSYPKLHKCFRSENNSDHR 292
+ + NN++ R+ P YS+ S F SENN +H+
Sbjct: 949 HKAPNNDEGREFQNPLYSRQSVFPDSDAFSSENNGNHQ 986
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 179 NSSSNNEKTRKNFVPHYSKFSYPKLHKCFRSENNSDHR 292
+ + NN++ R+ P YS+ S F SENN +H+
Sbjct: 949 HKAPNNDEGREFQNPLYSRQSVFPDSDAFSSENNGNHQ 986
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,026,714
Number of Sequences: 27780
Number of extensions: 128295
Number of successful extensions: 343
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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