Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C23
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.7  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.3  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   9.3  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -2

Query: 357 WHHLRHSVFFFLVRVDILTAEARSQLEIAVQIFKLFYLILIGKYIFCKNIYILYNIVLF 181
           W + RH +F  ++RV +  A          +I   F+L +   YIF K IYI + I+LF
Sbjct: 294 WVYSRHYLFSKILRVVVTNAP---------EIIGGFHLDVPNGYIFNKPIYIAFIILLF 343


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -2

Query: 387  GSFYVVSYPVWHHLRHSVFFFLVRV--DILTAEARSQLEIAVQIFKLFYLILIGKYIFCK 214
            G   V++  +  HL H    +++    D+  +       I V I    Y I + KY+   
Sbjct: 1167 GGLGVMAQLMARHLEHEDIIWVIPCVGDVSYSNVEEDDPIEVVIIDQTYFINVYKYVIGN 1226

Query: 213  NIYILYNIVLF 181
             IYIL +  +F
Sbjct: 1227 IIYILLDAPIF 1237


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 TILYKIYIFLQKIYLPISIK*NSLKIWTAIS 280
           TI+Y I I LQ   +P  ++    KIWT +S
Sbjct: 93  TIVYLIGIILQVTAVPSWVQIMVAKIWTGLS 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,580
Number of Sequences: 5004
Number of extensions: 63727
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)