Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C23
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical p...    32   0.53 
Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.       29   3.8  
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016452-16|AAO26004.1|  193|Caenorhabditis elegans Hypothetical...    28   8.7  

>Z78064-10|CAB01510.3|  299|Caenorhabditis elegans Hypothetical
           protein F57B1.1 protein.
          Length = 299

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 12/69 (17%), Positives = 32/69 (46%)
 Frame = -2

Query: 387 GSFYVVSYPVWHHLRHSVFFFLVRVDILTAEARSQLEIAVQIFKLFYLILIGKYIFCKNI 208
           G F  +S  +W H +  +FF+ +    ++    S L   + +    + ++  +++   + 
Sbjct: 11  GVFLALSVILWSHFKKMIFFWFLTQLTISVFIMSSLNFLINVPATLFALITKEFVQSASF 70

Query: 207 YILYNIVLF 181
           Y + N++ F
Sbjct: 71  YYMSNVIDF 79


>Z83231-1|CAB05749.1|  357|Caenorhabditis elegans Hypothetical
           protein F57G9.1 protein.
          Length = 357

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 282 LEIAVQIFKLFYLILIGKYIFCKNIYILYNIVLFH 178
           L++ + IF+L   IL G YI   +IY++  I LFH
Sbjct: 25  LKLVISIFELLSYILCG-YILNLSIYVMSKIQLFH 58


>Z79759-4|CAB02139.2|  395|Caenorhabditis elegans Hypothetical
           protein ZK858.4 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187 NNIIQNIYIFTKNIFTNQY*IKQLENLDCNLKLTAGLSSQNVHSY*EKKNTMPQMMP 357
           N +I N     K  F +Q+ ++  EN D  +++    S  +  SY ++    PQ+MP
Sbjct: 96  NRVINNNVKAGKIGFKSQFKLRTAENKDIEMRIHPNPSHSDYVSYIKRDVLFPQIMP 152


>U67737-1|AAC63596.1|  395|Caenorhabditis elegans MEL-26 protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 187 NNIIQNIYIFTKNIFTNQY*IKQLENLDCNLKLTAGLSSQNVHSY*EKKNTMPQMMP 357
           N +I N     K  F +Q+ ++  EN D  +++    S  +  SY ++    PQ+MP
Sbjct: 96  NRVINNNVKAGKIGFKSQFKLRTAENKDIEMRIHPNPSHSDYVSYIKRDVLFPQIMP 152


>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 642 PDNINAGPLSLQTGQHGVCGGSTHRALXQSCSTSAVHNSAT 764
           P N+NA   +    + G    S   ++ Q  STSA+HNSAT
Sbjct: 839 PMNVNASASATVQAECGTM--SVMDSICQPISTSAIHNSAT 877


>Z81116-3|CAB03303.1|  346|Caenorhabditis elegans Hypothetical
           protein T06C12.3 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = -2

Query: 372 VSYPVWHHLRHSVFFFLVRVDILTAEARSQLEIAVQIFKLFYLILIGKYIFCKNIYILYN 193
           ++ P  H+   ++  F +   I    ++S LEIA+ ++  FYL++I  +I    I  LY 
Sbjct: 60  IARPFAHNYNRALILFSINDWI---SSKSFLEIAISVWMTFYLLII-SFI---GIQFLYR 112

Query: 192 -IVLFH 178
            I LFH
Sbjct: 113 YICLFH 118


>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
           protein M142.6 protein.
          Length = 1014

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 642 PDNINAGPLSLQTGQHGVCGGSTHRALXQSCSTSAVHNSAT 764
           P N+NA   +    + G    S   ++ Q  STSA+HNSAT
Sbjct: 839 PMNVNASASATVQAECGTM--SVMDSICQPISTSAIHNSAT 877


>Z46791-4|CAA86758.1|  317|Caenorhabditis elegans Hypothetical
           protein C09G5.5 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 QSQVDCGPQQSECP 314
           QSQ +CGPQ S CP
Sbjct: 77  QSQCNCGPQASNCP 90


>AF016452-16|AAO26004.1|  193|Caenorhabditis elegans Hypothetical
           protein T05H4.15b protein.
          Length = 193

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 55  NKILQFVNKMFQNNIISVLMLCIVVAMQ*QLADSQSLC 168
           N I QF+ K+FQ++ + V+++  + +M+ +  DS  LC
Sbjct: 146 NGINQFL-KVFQDSFVKVILIFRIGSMEKEFLDSVELC 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,166,250
Number of Sequences: 27780
Number of extensions: 370902
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)