Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C21
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc...    36   0.002
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc...    34   0.007
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    29   0.35 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   0.81 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.1  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    26   1.9  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    24   7.6  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         24   7.6  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   7.6  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    24   10.0 
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    24   10.0 

>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 88

 Score = 35.9 bits (79), Expect = 0.002
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTRA 27
           LAR A+ +L E+G+I++V QH  Q IYTRA
Sbjct: 55  LARIAIRDLAERGVIQKVDQHSKQAIYTRA 84



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 186 KEVPQYKLITPAVVSERLKVRG 121
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53


>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
           S25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 34.3 bits (75), Expect = 0.007
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTR 30
           LAR A+ +L E+G+I++V QH  Q IYTR
Sbjct: 55  LARIAIRDLAERGVIQKVDQHSKQAIYTR 83



 Score = 27.5 bits (58), Expect = 0.81
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 186 KEVPQYKLITPAVVSERLKVRG 121
           KEVP +K I+ +V+ +R+K+ G
Sbjct: 32  KEVPAFKFISVSVLVDRMKING 53


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 199 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 312
           +M  YQ TP     HE   WT SS  L  H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 0.81
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 192  SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 290
            SF Y  L NN++L  +S +   ++ F++  PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 220
           K HR    DP+   P RR GP  + V +   +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 54  MLDYLFDETFFPKLDECSSR 113
           M D LF E+F  +LD C  R
Sbjct: 682 MADELFSESFLSRLDNCEKR 701


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEV 178
           PNS+K+ +R  K P++     +S P+   +T   +R   +   +RN  +++
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRNLQEQL 200


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 213 SNNTWLFNLSRTFPLDHFFFLAL 281
           S N+W+F L  TF     F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 SWLCRHRILPSSSVFFEAVW 330
           +WL +  ++PSSS F  + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 147 RQQV*LACTVGLPXYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 290
           R  V + C   L  + F  +G+ N         T P  +F+ L  PPP
Sbjct: 35  RWVVVIICIAAL-IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 166 LVLWDFLXTVSHMWVYQTT 222
           LVLW FL  +  +W+Y  T
Sbjct: 256 LVLWLFLSFLLALWIYYLT 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,363
Number of Sequences: 5004
Number of extensions: 33786
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)