Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C21
         (400 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p pro...    69   2e-12
AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB...    69   2e-12
AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA...    69   2e-12
U03289-1|AAA03464.1|  113|Drosophila melanogaster protein ( Dros...    67   9e-12
AY119144-1|AAM51004.1|  511|Drosophila melanogaster RE48727p pro...    27   7.0  
AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p pro...    27   7.0  
AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p pro...    27   7.0  
AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA ...    27   7.0  
AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB...    27   7.0  
AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA...    27   7.0  
AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB...    27   7.0  
AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC...    27   7.0  
AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC...    27   7.0  
AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB...    27   7.0  
AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA...    27   7.0  

>AY071076-1|AAL48698.1|  117|Drosophila melanogaster RE14595p
           protein.
          Length = 117

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 12
           LA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -1

Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 182
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 181 SP 176
            P
Sbjct: 61  VP 62



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -2

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEVPQYKLITPAVVSE 139
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 138 RLKVRG 121
           RLK+RG
Sbjct: 75  RLKIRG 80


>AE014297-1258|AAF54605.2|  117|Drosophila melanogaster CG6684-PB,
           isoform B protein.
          Length = 117

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 12
           LA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -1

Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 182
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 181 SP 176
            P
Sbjct: 61  VP 62



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -2

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEVPQYKLITPAVVSE 139
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 138 RLKVRG 121
           RLK+RG
Sbjct: 75  RLKIRG 80


>AE014297-1257|AAN13495.1|  117|Drosophila melanogaster CG6684-PA,
           isoform A protein.
          Length = 117

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 12
           LA+RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 82  LAKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 116



 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 30/62 (48%), Positives = 32/62 (51%)
 Frame = -1

Query: 361 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQG 182
           MPPKKDAK+SAKQPQ                          KLNNQVLFDK TYEKL + 
Sbjct: 1   MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60

Query: 181 SP 176
            P
Sbjct: 61  VP 62



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -2

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEVPQYKLITPAVVSE 139
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 15  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 74

Query: 138 RLKVRG 121
           RLK+RG
Sbjct: 75  RLKIRG 80


>U03289-1|AAA03464.1|  113|Drosophila melanogaster protein (
           Drosophila melanogasterSevelin ribosomal protein homolog
           gene, partial cds. ).
          Length = 113

 Score = 66.9 bits (156), Expect = 9e-12
 Identities = 31/35 (88%), Positives = 33/35 (94%)
 Frame = -3

Query: 116 LARRALIELREKGLIKQVVQHHGQVIYTRATKGDD 12
           L +RALIELREKGLIKQVVQHH QVIYTRATKGD+
Sbjct: 78  LDKRALIELREKGLIKQVVQHHSQVIYTRATKGDE 112



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -2

Query: 318 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEVPQYKLITPAVVSE 139
           +K +++++     K +++   K K       +            KEVP YKLITP+VVSE
Sbjct: 11  QKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAYKLITPSVVSE 70

Query: 138 RLKVRG 121
           RLK+RG
Sbjct: 71  RLKIRG 76



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 26/58 (44%), Positives = 28/58 (48%)
 Frame = -1

Query: 349 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLXQGSP 176
           KDAK+SAKQPQ                          KLNNQVLFDK TYEKL +  P
Sbjct: 1   KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVP 58


>AY119144-1|AAM51004.1|  511|Drosophila melanogaster RE48727p
           protein.
          Length = 511

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 249 KFVTS*TTRCCLINPHMRNCXKEVPQYKLITPA 151
           + +T+ TT C L+ P+M +  K+ P++  +  A
Sbjct: 234 QLITAITTACLLVLPYMTSSFKDTPRFNAMPRA 266


>AY113416-1|AAM29421.1|  583|Drosophila melanogaster RE16761p
           protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 173 CGTSLXQFLICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 289
           CG+ +  F    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


>AY052101-1|AAK93525.1|  607|Drosophila melanogaster SD04973p
           protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE014298-588|AAF45912.2|  583|Drosophila melanogaster CG6414-PA
           protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 173 CGTSLXQFLICGFIKQHLVVQLVTNFSFGPLLLLGFAAT 289
           CG+ +  F    F+  H +V +  NF  GP   LGF +T
Sbjct: 141 CGSGISSFYGPDFLLDHDIVLVSANFRLGP---LGFLST 176


>AE014297-3209|AAF56041.3|  872|Drosophila melanogaster CG4917-PB,
           isoform B protein.
          Length = 872

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 249 KFVTS*TTRCCLINPHMRNCXKEVPQYKLITPA 151
           + +T+ TT C L+ P+M +  K+ P++  +  A
Sbjct: 595 QLITAITTACLLVLPYMTSSFKDTPRFNAMPRA 627


>AE014297-3208|AAN13917.2|  853|Drosophila melanogaster CG4917-PA,
           isoform A protein.
          Length = 853

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 249 KFVTS*TTRCCLINPHMRNCXKEVPQYKLITPA 151
           + +T+ TT C L+ P+M +  K+ P++  +  A
Sbjct: 576 QLITAITTACLLVLPYMTSSFKDTPRFNAMPRA 608


>AE014134-2656|AAG22436.2|  379|Drosophila melanogaster CG4793-PB,
           isoform B protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 213 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 302
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC,
           isoform C protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 213 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 302
           +NN  L  L+R   LDH    + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219


>AE013599-3005|AAF57474.1|  567|Drosophila melanogaster CG8929-PC,
           isoform C protein.
          Length = 567

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
           P+S  + R R+  P++  PRRRS P
Sbjct: 88  PHSRSRSRLRKSPPLSPPPRRRSPP 112


>AE013599-3004|AAF57475.2|  607|Drosophila melanogaster CG8929-PB,
           isoform B protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


>AE013599-3003|AAF57473.2|  607|Drosophila melanogaster CG8929-PA,
           isoform A protein.
          Length = 607

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 330 PNSLKKHRRRRKDPVAAKPRRRSGP 256
           P+S  + R R+  P++  PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,940,212
Number of Sequences: 53049
Number of extensions: 386307
Number of successful extensions: 1124
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1149697725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)