Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C19
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...   108   8e-25
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    48   2e-06
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   2.4  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   5.6  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   9.7  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    25   9.7  

>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score =  108 bits (259), Expect = 8e-25
 Identities = 62/169 (36%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
 Frame = -1

Query: 652 KRRRFLIEKCKDANIIGILICKLSGKQTKDIISRMKELCKVNGKKSYIVSVGKPNSAKLA 473
           +RR  L+++C+DA +IGI+I  L   +   ++++++++    GKK Y+++VGK N AKLA
Sbjct: 262 RRRYALVQRCRDAGVIGIVIGTLGVHRYLHVLNQLRKMILNAGKKPYMLAVGKLNPAKLA 321

Query: 472 NFPEIDIYVMIACPENDLYSSRDFYRPIVFPYELEIALNSNREPFPTYHVTDYDELLPGR 293
           NF EI+ +V+IAC EN L  S++FYRPIV P+EL  AL+S+   +    +  +DE+L   
Sbjct: 322 NFQEIECFVLIACGENSLIDSKEFYRPIVTPFELVKALSSDMS-WNNDFILSFDEVLKLS 380

Query: 292 RHYGDIKPIQEIAD------VSLITGR-IREAKVNHLDGSSQELAEQQN 167
                 +P + + +       SLITG+ +    + HLD  + E A+ +N
Sbjct: 381 EGKQSKEPSEVLTEESAEPHFSLITGKFVNSTPMRHLD-VTLETADAKN 428


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 23/93 (24%), Positives = 44/93 (47%)
 Frame = -1

Query: 634 IEKCKDANIIGILICKLSGKQTKDIISRMKELCKVNGKKSYIVSVGKPNSAKLANFPEID 455
           +EK + A   G++   L  + +  ++  +K   + N K    V + +   ++L  F +ID
Sbjct: 302 VEKARTAKKFGLIQGTLGRQGSPKVLENLKNTLRKNNKDFVCVLMSEIFPSRLGQFSDID 361

Query: 454 IYVMIACPENDLYSSRDFYRPIVFPYELEIALN 356
            ++ +ACP   +     F  P++ PYE   A N
Sbjct: 362 AWIQVACPRLSIDWGYAFPAPLLTPYEASAAFN 394


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 372 LKLPSIPTENLFPHTMSQTMMNFYLEEDTMEILNRYKR 259
           ++LP I T+   P T S T   +Y++ED ++  +  K+
Sbjct: 135 VRLPMIETDIRVPETFSGTPNFYYVQEDILKEFSNGKK 172


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 286 SVFFQVEVHHSL*HGMWEKVLCWN*GQFQVRTGKLLVYKSPAN 414
           +V   V+VH+ L  G W ++  W     +    KLL ++  AN
Sbjct: 244 NVPIMVQVHNFLNEGAWSEIKAWEREAGENTEPKLLRFEGNAN 286


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 84  FLQFRLVFVLALSKSLSWRVFPIDSKAQFCCSASS 188
           F +F+ +  + +++SL++     DSK+ +CC ASS
Sbjct: 423 FYKFKRLEEMEMTRSLAFN----DSKSDWCCLASS 453


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 576 LPDSLHISIPIILASLHFSIRKRLR 650
           +PD+L  +IPI +A+L+  + +RLR
Sbjct: 111 MPDALSKTIPIWIATLNKCVFERLR 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,465,245
Number of Sequences: 5004
Number of extensions: 51259
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)