Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C18
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    28   1.7  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   4.0  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   4.0  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   7.0  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    26   7.0  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   9.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   9.2  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   9.2  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 682 WWSTRAGLLYAVSTSKYRLWIVVIILKTLLSSCPIT 575
           W+ TR G+L+ V    +      I+ K  +S+CPIT
Sbjct: 522 WFGTRDGMLWEVDVQNHH-----IVTKKSVSNCPIT 552


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 576  HYCTIFLCNNLCIIFNSIK--TDKYK*EYIETFSIKS 472
            H   +F  N++C + NS+K   D +     +TFSIKS
Sbjct: 941  HCGDLFAINHVCFVRNSLKYLLDDFTKVITKTFSIKS 977


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -1

Query: 664 GLLYAVSTSKYRLWIVVIILKTLLSSCPIT 575
           G  Y  S   +R WI+VII+ TL+++  IT
Sbjct: 578 GSKYIFSKLFFRGWIIVIIIWTLIAALYIT 607


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 381 F*KKKNLCCQLRCATVVLPFDCH 449
           F +K +L    RC T V PF CH
Sbjct: 64  FYRKSHLKIHKRCHTNVKPFSCH 86


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 446 SLNKNQQTGLLIL-KVSMYSYLYLSVFIELNIIHKLLHKNIV 568
           S+++ +   + ++ K  M       VF E+NI+ ++ HKN+V
Sbjct: 84  SIDRKEHVAVKVIRKYEMNKKQRQGVFKEVNIMRRVKHKNVV 125


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 KNQQTGLLILKVSMYSYLYLSVFIELNIIHKL 550
           ++   GLL++ +  + +L L++FI + II  L
Sbjct: 47  RSTSVGLLLITIICHLFLLLNIFISIPIISHL 78


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 276 LTDSKQTESQNYHKFIPTYYKYLDKYSLILC 368
           L DS   + Q Y K +P Y K +++   I+C
Sbjct: 115 LPDSSHPDYQAYEKALPEYKKSIEEKFPIVC 145


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 362  PLLLIFVLEKKKFVLSASMRDCS 430
            P L +FV EKKK ++S +M D S
Sbjct: 2985 PNLELFVKEKKKPIMSITMSDSS 3007


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 170 NRLNKIRYCLCKIVIIY*EPKN-LSFRYFVSFSIVYSHR 283
           +RLN +RYC   IV+ + +  N L+F Y   +SI+  +R
Sbjct: 498 SRLNPLRYCSPNIVLQFAKVANHLNFMYV--YSIIEQNR 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,610
Number of Sequences: 5004
Number of extensions: 64116
Number of successful extensions: 110
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)