Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C18
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0230 - 14572854-14574632                                         29   4.1  
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387...    28   9.6  
08_02_0232 - 14584952-14586451                                         28   9.6  
03_05_0767 - 27572322-27572591                                         28   9.6  

>08_02_0230 - 14572854-14574632
          Length = 592

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -2

Query: 597 CCPVARLHYCTIFLCNNLCIIFNSIKTDKYK*EYIETFSIKSPVC*FLFNDN 442
           C    RL  CT+ LC+   +I  + +  + + E + TFS + P+  F+F+++
Sbjct: 210 CLTTLRLRRCTVRLCDLQKVILAAPRLAELRLESV-TFSDRPPLSGFIFDEH 260


>09_06_0131 -
           21037698-21038210,21038293-21038532,21038679-21038789,
           21038872-21038926,21039074-21039210,21039284-21039421,
           21040304-21040494,21040625-21040703
          Length = 487

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +2

Query: 350 IFTHPLLLIFVLEKKKFVLSASMRDCSFTL*LSLNKNQQTGLLILKVSMYSYLY 511
           I+ + L+LIF+++ KK+  + +    S T   +LN+     L     + YSY++
Sbjct: 118 IYCYLLVLIFLIDNKKYDEAKACASASITRLKNLNRRTVDVLASRVFTYYSYVH 171


>08_02_0232 - 14584952-14586451
          Length = 499

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 597 CCPVARLHYCTIFLCNNLCIIFNSIKTDKYK*EYIETFSIKSPVC*FLFNDN 442
           C    RL  CT+ LC+   +I  + +  + + E + TF  +  +C F+F+++
Sbjct: 170 CLTTLRLRRCTVRLCDLQNVILAAPRLAELRLESV-TFPDRPSLCGFIFDEH 220


>03_05_0767 - 27572322-27572591
          Length = 89

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 706 LRQKQPRWWWST 671
           +RQ+Q  WWWST
Sbjct: 5   VRQRQSEWWWST 16


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,429,496
Number of Sequences: 37544
Number of extensions: 343021
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)