Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C18
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   4.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   7.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 487 SFYVLLFVLIRLY 525
           SFY+ LFV+I++Y
Sbjct: 210 SFYIPLFVMIQVY 222


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 LSDISFLFQ*CTLTDSKQTESQNYHKFIPTYYKYLDKYSLIL 365
           LSD S+  + C LT++++  S     +   +   +D ++ +L
Sbjct: 514 LSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVL 555


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = +3

Query: 240 LSDISFLFQ*CTLTDSKQTESQNYHKFIPTYYKYLDKYSLIL 365
           LSD S+  + C LT++++  S     +   +   +D ++ +L
Sbjct: 482 LSDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDHFNAVL 523


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 620 DPQSVFTSGY 649
           DP+S+F SGY
Sbjct: 544 DPKSIFNSGY 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,336
Number of Sequences: 438
Number of extensions: 4842
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)