Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C15
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.6  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    27   3.5  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   4.6  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   6.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   6.1  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -3

Query: 423 TSLNSGITIGTETGL*RAALMALVATRCETITNRLDAYFKVQIKFYSLIC---NLINNRE 253
           +S+NS    GT+T    + L  L        ++ L  Y+   + FY+ I    N+ N  +
Sbjct: 176 SSINSHRIEGTDTSAETSLLHCLAYVAPYLKSSELSTYYDSVMTFYAQIYPKQNMTNLED 235

Query: 252 KGPLGLIRPFSNSSHIXSNDTS 187
              L L+ P S+ +   +N +S
Sbjct: 236 IMSLSLLTPVSSKTDENANSSS 257


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 697 PQLCASCQVTSSNQWYSWGPQHLQYRLCGTCWQYW 593
           P  C +C    +  W +    ++   LC  C  YW
Sbjct: 348 PPYCQNCGTIKTANWRNATYMNITLMLCNACGIYW 382


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = +1

Query: 436 IYNKE*LTICNDFR*Q------FNVAIR*FLLCFSFFALRSIYEFYVFKFSPLDRHIFSS 597
           + NKE L+  ND+  +      ++  +   L  F  + + ++++ Y    + L RH+   
Sbjct: 170 VLNKELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSYQRFATLLRRHLLDK 229

Query: 598 TANMYHTIC 624
           TA  YH +C
Sbjct: 230 TAKRYHDLC 238


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 691 LCASCQVTSSNQWYSWGPQHLQYRLCGTCWQYWKKYGGLK 572
           +C +C VT +  W     + L + LC  C  Y K+YG ++
Sbjct: 364 VCFNCGVTETPLWRRTSDK-LNF-LCNACGLYNKQYGVMR 401


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 703 PAP--QLCASCQVTSSNQWYSWGPQHLQYRLCGTCWQYWK 590
           PAP  Q C++C  T+++ W   GP +    LC  C  Y K
Sbjct: 5   PAPFGQSCSNCHKTTTSLWRR-GPDN--SLLCNACGLYQK 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,405
Number of Sequences: 5004
Number of extensions: 46839
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)