Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C13
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.2  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   2.8  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    27   3.7  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   6.4  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   6.4  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   6.4  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    26   6.4  

>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 506 FDALLEVGVEGLHAVDCGAIELWLTV 583
           F A  ++    L +V+CGA ELWLT+
Sbjct: 7   FSAFADIPSVYLISVNCGARELWLTI 32


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 537 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTA 418
           PST T   ASK T  T+  AQ +S+  ++S      K TA
Sbjct: 36  PSTQTGGYASKDTTSTYEGAQPLSSQSSRSSNYTNVKITA 75


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 492 SNSYVLTHSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWEHGFLIRFCGKGDR 650
           SNS  + +SW +E ++ T+ +    +   P E   +   +HG ++  CG   +
Sbjct: 117 SNSSCIVYSWNAEQRNLTEISRFTCSEIIPLEF-AIVKLDHGIILTVCGSSKK 168


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 573 HSSIAPQSTAWSPSTPTSRSASKRTNWTHVA 481
           HSS+A  +T WSP  P S   +  T +T VA
Sbjct: 36  HSSVADVNTLWSPG-PESAFDAAETYYTLVA 65


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -1

Query: 458 GRNRNVKNLPSGRQNVQGGGDFRAPEHKEDLHLYIRLE 345
           GR  + +  P G   V+GG +  +PE KE  H  I  E
Sbjct: 432 GRTFDPRFAPRGSPPVRGGKNVLSPEAKEHTHKNISPE 469


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 295 LSRNRCLCNKLSCPRSHSSRMYRCRSSLCSGA 390
           L R +C+    SC   H  +   CR+  C GA
Sbjct: 480 LPRTQCVDTPPSCCGGHCCKEESCRTENCKGA 511


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = +3

Query: 405 SLYVLPSTWQVFNVAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGSPS 584
           +L    ++W + NVA  S  QT  V++  +    ++    SE     Q+  A  N    S
Sbjct: 135 NLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNIAGDS 194

Query: 585 EMRQLHAWEHGFL 623
            M + H  + G L
Sbjct: 195 PMCRDHVLQCGVL 207


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 503 VRIGLMLQHSKCLRQGRNRNVKNLPSGRQNVQGGGDFR 390
           +R+    Q  +  ++   +++K L  G  N +GGG+F+
Sbjct: 249 IRLSQDAQEEEKQKKKYEQHIKKLLDGESNEEGGGEFQ 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,713
Number of Sequences: 5004
Number of extensions: 63552
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)