Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_C13
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0861 + 6710815-6713142 34 0.10
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 31 0.95
08_01_0201 + 1635964-1637010 31 1.3
10_08_0650 - 19591898-19593148 30 1.7
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 29 2.9
07_03_0610 + 19932220-19933176,19933270-19933782 29 3.8
09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420 29 5.1
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179 29 5.1
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 5.1
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 28 6.7
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 6.7
07_01_0229 - 1672126-1673976,1674427-1675404 28 6.7
03_05_0034 + 20064750-20065001,20065542-20065730,20066313-200665... 28 6.7
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 8.8
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398... 28 8.8
07_03_1020 + 23344657-23346969 28 8.8
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627... 28 8.8
>01_01_0861 + 6710815-6713142
Length = 775
Score = 34.3 bits (75), Expect = 0.10
Identities = 31/128 (24%), Positives = 49/128 (38%)
Frame = +3
Query: 60 TKGGTSQIHVVHCSPTVISSPTDSVWLPKXHWALTLRRFSPLITFVVVDGHSKPIGQLRP 239
+KGG ++ SP S T +W K +L ++P+ F + + S +
Sbjct: 53 SKGGAFRLGFNCLSPPCYSDSTFGIWYIKSSTCRSLLVWAPVANFCIFNPWSSSF--ILS 110
Query: 240 FPANIGAQLSNILSW*CISKPQSMSLQ*AELSAEPLQSDVQMQVFLVFWGSKISPSLYVL 419
+ + LSW S+S L L Q+ +VFW S +P +L
Sbjct: 111 EDGKLNLIIDGSLSWSSNGVETSVSAVAILLDNGNLVIRDQVNSTMVFWQSFDNPIGILL 170
Query: 420 PSTWQVFN 443
P W FN
Sbjct: 171 PGGWLGFN 178
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 31.1 bits (67), Expect = 0.95
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -3
Query: 537 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPASV 358
PS +R+ S T W + +Q A R + +PAKWT+ + P+ G A+V
Sbjct: 281 PSHGLARTRSNNTAWQTLGSQ---ADRNKENNMRPAKWTSHKI-------PQKVGSRAAV 330
Query: 357 HPTGVA 340
PT V+
Sbjct: 331 QPTRVS 336
>08_01_0201 + 1635964-1637010
Length = 348
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 375 GRPASVHPTGVAPRTTQLIAETSIAA 298
GRP SVHP APRT + +S AA
Sbjct: 84 GRPLSVHPPLAAPRTFSTVLRSSSAA 109
>10_08_0650 - 19591898-19593148
Length = 416
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = -3
Query: 576 SHSSIAPQSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWT 421
SH+ P S A SP++ SR AS T W+ AA+ SA R + P WT
Sbjct: 349 SHAFALPASGAASPAS--SRIAS--TTWSDYAARSSSAHRGRLAVSSPCHWT 396
>01_05_0246 +
19880364-19880565,19880721-19880801,19880891-19881054,
19881784-19881835,19882110-19882462
Length = 283
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = -2
Query: 433 CQVDGKTYREGEIFEPQNTRKT----CICTSDWSGSADNSAYCRDI 308
C + GK +G N R+T C CT D SA+ Y +DI
Sbjct: 79 CCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDI 124
>07_03_0610 + 19932220-19933176,19933270-19933782
Length = 489
Score = 29.1 bits (62), Expect = 3.8
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 411 YVLPSTWQVFNVAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTA 557
YV+P WQVF +AS+ A + H+ + ++ + R +S+ S+ STA
Sbjct: 374 YVIPKGWQVF--WVASVTHMDAAIFHDPDKFLPS---RFDSQSSSPSTA 417
>09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420
Length = 217
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 424 DGKTYREGEIFEPQNTRKTCI 362
DG+ + G +EP RKTCI
Sbjct: 101 DGEVFSVGSTYEPSKVRKTCI 121
>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
Length = 180
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 555 QSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQ 445
+STA + STPT RS++ T +T ++Q+ + SQ
Sbjct: 141 RSTASTTSTPTGRSSTGATGYTSRSSQRRNVGWISSQ 177
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/104 (19%), Positives = 42/104 (40%)
Frame = -2
Query: 712 KCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF 533
+C HP PT+ R + T + + ++N C + +CR P + + +
Sbjct: 123 ECKYAHPHPTVAVDRDSKVTACA----DSLRNNCFRGRTCRYYHPPPHIQESLLRSIGVE 178
Query: 532 DSDLQECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYREG 401
D ++ + + C +AN C + L+ C + + + G
Sbjct: 179 DPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRG 222
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -2
Query: 721 DAFKCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACS 596
D +C D HP +C SYT ++LI C Q+ S
Sbjct: 338 DIDECQDAHPCTGICINTQGSYTCTCQRGKHLIDGVCKQSSS 379
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -3
Query: 558 PQSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSS 388
P S +PSTP SRS + N V S+ R S R W A R F S
Sbjct: 90 PSSRVSTPSTPASRSVTPVRN--TVTEGHKSSRRITSTRNTDGLWPAMRNLSSSFQS 144
>07_01_0229 - 1672126-1673976,1674427-1675404
Length = 942
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 92 TLLADSYLIAD*QRLVAEXALGTHAAQIQSSHYFRGCRWTFKTN 223
TLL+ SY ++ VA L QI+S HY G W+F N
Sbjct: 501 TLLSMSYNLSAVLTNVAYVGLSAATGQIESRHYILG--WSFSMN 542
>03_05_0034 +
20064750-20065001,20065542-20065730,20066313-20066511,
20069479-20069885
Length = 348
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -2
Query: 583 DGEPQFDCAAVDCVESFDSDLQ-ECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYR 407
D +P A D +++ L+ +C T SC + +DA++ G+ +
Sbjct: 103 DAKPNHTLDAYDVIDAIKEKLEHKCPATV---SCADILAIAARDAVSLATKAVRQGRWSK 159
Query: 406 EGEIFEPQNTRK 371
+G ++E + R+
Sbjct: 160 DGNLYEVETGRR 171
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 27.9 bits (59), Expect = 8.8
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -3
Query: 525 TSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPAS---VH 355
+SRS S+ +W+ ++ S +R++S+ P++ ++ +G + P + RP S V
Sbjct: 1238 SSRSRSRSRSWSRSRSRSRSWSRSRSRSRSPSRSRSRSYDQG--AGPARRPRPRSGFDVL 1295
Query: 354 P--TGVAPRTT 328
P TG P +T
Sbjct: 1296 PPATGAGPAST 1306
>08_02_0811 +
21438848-21439001,21439469-21439662,21439769-21439897,
21441552-21441671,21441751-21441887,21441969-21442124,
21442565-21442943,21443041-21443157,21443225-21443371
Length = 510
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 27 LASQAFCLKHXTKGGTSQIHVVHC 98
+A A LK T+G + +H+VHC
Sbjct: 187 IAGNALVLKPPTQGAVAALHMVHC 210
>07_03_1020 + 23344657-23346969
Length = 770
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +3
Query: 462 PQTFAVLQHESNSYVLTHSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWE---HGFLIRF 632
P FA L+H S V THS R+ +T +TAA + R L+ ++ HGF +R
Sbjct: 55 PSRFATLEHWYISMVATHSPRA----ATNATAAAAAVAG----RILYTYDTVMHGFAVRL 106
Query: 633 CGKGDRSV 656
RS+
Sbjct: 107 AADEARSL 114
>05_02_0065 -
6276439-6276462,6276716-6276781,6277035-6277100,
6277384-6277449,6277698-6277745,6278233-6278292,
6278418-6278483,6278569-6278652,6278736-6278801,
6278878-6279036,6279106-6279222,6279305-6279397,
6279697-6279900,6280013-6280161,6280234-6280492
Length = 508
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -2
Query: 544 VESFDSDLQEC-VKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYREGEIFEPQNTRKT 368
V++ D++L E KT +L+ N G D ++T K VDG + ++ ++
Sbjct: 303 VQNHDAELLELKAKTNKLEK--EQMNQGGLDRVSTNKEASVDGPISKRRRVYSDHPLQEI 360
Query: 367 CICTSD 350
CI +
Sbjct: 361 CIAEEE 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,284,270
Number of Sequences: 37544
Number of extensions: 478651
Number of successful extensions: 1659
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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