Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_C13
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 37 0.017
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 34 0.12
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 33 0.21
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 33 0.21
Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical pr... 32 0.48
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 31 0.85
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 31 1.1
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 31 1.1
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 2.0
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 2.0
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical ... 30 2.0
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 29 2.6
L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical pr... 29 2.6
AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical... 29 2.6
U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in bl... 29 3.4
AL021492-13|CAA16381.2| 201|Caenorhabditis elegans Hypothetical... 29 4.5
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 29 4.5
U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical p... 28 6.0
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 6.0
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical... 28 6.0
AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical... 28 6.0
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr... 28 7.9
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog... 28 7.9
AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical ... 28 7.9
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro... 28 7.9
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 36.7 bits (81), Expect = 0.017
Identities = 24/70 (34%), Positives = 33/70 (47%)
Frame = -3
Query: 540 SPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPAS 361
+P T T+R+ RT + A RT+ R +P K A RT R + +P T P +
Sbjct: 545 APETVTTRTEPPRTEPPRTIPPRTEAPRTEPPRTEPPKTEAPRTVRPKTEAPMTV-PPRT 603
Query: 360 VHPTGVAPRT 331
P APRT
Sbjct: 604 EPPMTEAPRT 613
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 495 WTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPASVHPTGVAPRT 331
WT A + RT+ R +P + RT R PRT+ P + P V P+T
Sbjct: 540 WTRTEAPETVTTRTEPPRTEPPRTIPPRTEAPRTEPPRTE-PPKTEAPRTVRPKT 593
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = -2
Query: 517 ECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGS 338
ECV T + +CC + + + TC G + + ++P + R +G+
Sbjct: 490 ECVYTGTMHACCPSRELTCNQGLQVGTTC---GLSTLQRWYYDPLHNRCNQFEYQGCNGN 546
Query: 337 ADNSAYCRDIDCGLEIHYQDKIFDNCAPIFAGNGR--SCPIGFECPSTTT 194
DN+ R +DC H D A I + NGR +C +CPST T
Sbjct: 547 -DNNFVTR-VDCIETCHRSDCPDGGDALIDSSNGRIIACERNDDCPSTHT 594
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 649 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 473
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 472 NVC 464
VC
Sbjct: 556 GVC 558
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -2
Query: 649 RSPLPQNL-IKNPCSQACSCRISDGEPQFDCAAVDCVESFDSDLQECVKTYELDSCCSTA 473
+S L +NL + +PC +C D + C C + F+ D+ E K L++ CS
Sbjct: 499 KSSLSENLCLSDPCMNNATCIDVDAHIGYACI---CKQGFEGDICERHKDLCLENPCSNG 555
Query: 472 NVC 464
VC
Sbjct: 556 GVC 558
>Z83107-6|CAD92391.1| 877|Caenorhabditis elegans Hypothetical
protein F32A7.5c protein.
Length = 877
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 721 DAFKCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNP 614
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>Z83107-4|CAB05498.1| 878|Caenorhabditis elegans Hypothetical
protein F32A7.5a protein.
Length = 878
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 721 DAFKCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNP 614
DAFK P+ HP+P + G S D+ P P + K P
Sbjct: 462 DAFKKPEPHPEPNV---SGGSEEDKIPEPVDAFKKP 494
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 31.1 bits (67), Expect = 0.85
Identities = 35/109 (32%), Positives = 45/109 (41%), Gaps = 6/109 (5%)
Frame = -2
Query: 610 SQACSCRISDGEPQFDCAAVD-CVE-SFDSD-LQECVKTYELDSC--CST-ANVCGKDAI 449
S SCR + QF C+ D C+ S D + +C + +C C A+ CGK+ I
Sbjct: 207 SDEASCRSKCSKDQFKCSGSDACLPISVKCDGVSDCENESDESNCNKCQKGAHKCGKNCI 266
Query: 448 ATLKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDC 302
K C DG + E Q KTC SGS A C D C
Sbjct: 267 KASKVC--DGIPDCDDGSDEHQCDCKTC------SGS--EKALCEDGTC 305
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 232 SCPIGFECPSTTTKVMRGLNLRSV 161
SC G +CP+ TT V +G +LRS+
Sbjct: 17 SCQSGCKCPTKTTAVCKGSSLRSI 40
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 232 SCPIGFECPSTTTKVMRGLNLRSV 161
SC G +CP+ TT V +G +LRS+
Sbjct: 17 SCQSGCKCPTKTTAVCKGSSLRSI 40
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = -2
Query: 325 AYCRDIDCGLEIHYQ--DKIFDNCAPIFAGNGRSCPIGFECPSTTTKVMR 182
A+C ++ E YQ ++I D+ +FAG + IG PSTT KV++
Sbjct: 138 AFCVEMSTAGEPAYQLVEQIRDSRVKVFAGTACAKDIGPREPSTTNKVLQ 187
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = -2
Query: 730 ICPDAFKCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAV 551
+C F C D + ++C+ S ++ PL C Q C D + + C
Sbjct: 3205 VCDRNFDCTDRSDESSLCFIDECSLAEK-PL--------CEQKC----MDMKIGYKC--- 3248
Query: 550 DCVESFDSDLQECVKTYELDSCCSTANVCGK---DAIATLKTCQVDG 419
DC E F D+ + + ++ C + C + D I + K VDG
Sbjct: 3249 DCFEGFAIDISDQKSCHNVNECYEGISGCSQKCDDKIGSYKCGCVDG 3295
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Frame = -2
Query: 730 ICPDAFKCPDXHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAV 551
+C F C D + ++C+ S ++ PL C Q C D + + C
Sbjct: 3205 VCDRNFDCTDRSDESSLCFIDECSLAEK-PL--------CEQKC----MDMKIGYKC--- 3248
Query: 550 DCVESFDSDLQECVKTYELDSCCSTANVCGK---DAIATLKTCQVDG 419
DC E F D+ + + ++ C + C + D I + K VDG
Sbjct: 3249 DCFEGFAIDISDQKSCHNVNECYEGISGCSQKCDDKIGSYKCGCVDG 3295
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = -2
Query: 445 TLKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDCGLEIHYQDKIFD 266
T+KT VDGK + +I++ + T + SA+ C DI C + D
Sbjct: 48 TMKTLVVDGKRVKL-QIWDTGGQERFRTITQSYYRSANGIVLCYDITCKQSFGSLQRWID 106
Query: 265 NCAPIFAGNGRSCPIGFEC 209
+ + A N IG +C
Sbjct: 107 DVSKFAAPNVVKLLIGTKC 125
>AC006684-1|AAF39967.1| 198|Caenorhabditis elegans Hypothetical
protein T02H6.9 protein.
Length = 198
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 510 THSWRSESKDSTQSTAAQSNCGSPSEMRQLHAWEHG 617
+ SWR +KD + + CG P R+ ++W G
Sbjct: 113 SESWRGGNKDDVAANNFAAYCGRPEAPRRRYSWIQG 148
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Frame = -2
Query: 367 CICTSDWSGSA---DNSAYCRDIDCGLEIHYQDKIFD---NCAPIFAGNGRSCPIGFECP 206
C C S +SGSA + C + C + Q+ + C P + GNG C EC
Sbjct: 106 CYCDSGFSGSACELQDKNECLEHPCHMMAQCQNTLGSYECRCLPGYEGNGHECTDIDECS 165
Query: 205 STTT 194
T
Sbjct: 166 DKLT 169
>L14433-7|AAA27972.1| 469|Caenorhabditis elegans Hypothetical
protein C50C3.1 protein.
Length = 469
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 201 VDGHSKPIGQLRPFPANIGAQLSN 272
VD H KPI + R FPA+ G + S+
Sbjct: 161 VDDHGKPIAEYRDFPADEGDEASS 184
>AC084153-16|AAK84590.1| 233|Caenorhabditis elegans Hypothetical
protein Y22D7AL.16 protein.
Length = 233
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Frame = +1
Query: 277 CPG-NVFLSRNRC----LCNKLSCPRSHSSRMYRC 366
CPG S N C CNK +CP HS+R C
Sbjct: 185 CPGAKCIYSHNMCRYEDTCNKSTCPFDHSNRPRTC 219
>U46675-3|AAB52643.1| 375|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 10 protein.
Length = 375
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = -2
Query: 652 DRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVD---CVESFDSDLQECVKTYELDSCC 482
D +P+ QN AC C +P DCA V C + +C + + CC
Sbjct: 202 DCAPVQQNPCCQQAQPACDCAPVQQQPACDCAPVQQNPCCQQQAQSTCDCAPVQQ-NPCC 260
Query: 481 STA 473
A
Sbjct: 261 QQA 263
>AL021492-13|CAA16381.2| 201|Caenorhabditis elegans Hypothetical
protein Y45F10D.6 protein.
Length = 201
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 439 KTCQVDGKTYREGEIFEPQNTRKTC 365
K C+ +G +Y+ GE F+ N R TC
Sbjct: 46 KVCKKNGHSYKVGEEFDVGNLRYTC 70
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = +1
Query: 274 FCPGNVFLSRNRCLCNKLSCPRSHSSRMYRCRSS-----LCSGARKSPPPCTFCRPLGRF 438
F ++ + R +CN C S+ + +C SS +CS RKS CR RF
Sbjct: 281 FTTFGLYHHQRRQMCNSTGCSYLSSTGIRQCNSSKCISCVCSNYRKSDG----CRSSSRF 336
Query: 439 LT 444
LT
Sbjct: 337 LT 338
>U58750-13|AAB00653.1| 616|Caenorhabditis elegans Hypothetical
protein F55G1.13 protein.
Length = 616
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Frame = -2
Query: 490 SCCSTANV-CGKDAIATLK---TCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNS- 326
S C+ +N+ G A+ +L T + G+ G+ + T TC+C +GSA S
Sbjct: 265 STCAYSNLNSGFAAVYSLNDLCTPEPCGEAAGNGKCIQTSATAYTCLCNPIKTGSACQSD 324
Query: 325 ---AYCRDIDCGL 296
C IDCG+
Sbjct: 325 ATLTPCASIDCGV 337
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Frame = -2
Query: 370 TCICTSDWSGS--ADNSAYCRDIDCGLEIHYQDKIFD----NCAPIFAGNGRSCPIGF-E 212
TC CT DW G+ + YC + C +D I NC G +C I E
Sbjct: 428 TCQCTPDWKGTYCEEERYYCDETPCENGGECEDIIGPPNSYNCTCTPQWTGFNCTIDVDE 487
Query: 211 CPSTTT 194
C TT
Sbjct: 488 CVEDTT 493
>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
protein C16A3.7 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Frame = +1
Query: 310 CLCNKLSCPRSHSSRMYRCRSSLCSGARK--SPPPCT-FCRP 426
C C ++ P + C GARK P PCT C P
Sbjct: 299 CFCGRMRNPNFRVGEVPHSCGETCGGARKFGCPHPCTELCHP 340
>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
protein F40F4.6 protein.
Length = 2214
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 409 REGEIFEPQNTRKTCICTSDWSGSADNSAYCRDIDC 302
+ G + P NT TC CT +++G+ YC++I C
Sbjct: 842 QNGGVMNPSNT--TCFCTPEFTGT-----YCQNIIC 870
>AF016687-11|ABL01528.1| 646|Caenorhabditis elegans Hypothetical
protein T21D12.7 protein.
Length = 646
Score = 28.3 bits (60), Expect = 6.0
Identities = 40/158 (25%), Positives = 59/158 (37%), Gaps = 20/158 (12%)
Frame = -2
Query: 622 KNPCSQACSCRI--SDGEPQFDCAAVDCVESFDSDLQECVKTYELDS-------CCSTAN 470
K C CS I GEP D +++ + + D + C + Y S CC +
Sbjct: 167 KGECMMFCSSEIICPRGEPHADRYSINNIATCMED-KHCPRNYTCTSKVGKKGACCPSKE 225
Query: 469 -VCG-----KDAIATLKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGSADNSAYCRDI 308
VCG K+ + YR+GE +++ C ++ A N C D
Sbjct: 226 FVCGTPFEIKNNCRKPEPVNTWWFDYRKGECKRAEHSN----CEEHFNSFA-NQEQCADY 280
Query: 307 DCG-----LEIHYQDKIFDNCAPIFAGNGRSCPIGFEC 209
G LE+H + F N CP+GFEC
Sbjct: 281 CVGTCPNNLEVHSNPRTGQPHLCDFLKN-EGCPMGFEC 317
>AC024817-54|AAF59564.1| 229|Caenorhabditis elegans Hypothetical
protein Y54G2A.27 protein.
Length = 229
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 543 WSPSTPTSRSASKRTNWTHVAAQQMSAARTQS 448
WSPS+P S +R W+ ++ +S R ++
Sbjct: 195 WSPSSPHSVHCHRRVGWSSSSSSPLSRCRARA 226
>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
ZC84.1 protein.
Length = 1556
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Frame = -2
Query: 514 CVKTYELDSCCSTANVCGKDAIATLKTCQVD-GKTYREGEIFEPQNTRKTCICTSDWSGS 338
C +L C T C +++ +C+ G + G+ P +K+ + S S
Sbjct: 1231 CHNKAKLGEACLTVRQCQENSGCIEGSCECKKGFIEKAGKCMTPVE-KKSAVS----SKS 1285
Query: 337 ADNSAYCRDIDCGLEIHYQDKIFDNCAPIFAGNGRSCPIGFEC 209
+N C I + + +C+PI G++CP G+EC
Sbjct: 1286 INNGVTCSKPGWNPLIDEEHERPKHCSPI----GKACPNGYEC 1324
>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
domain protein 1 protein.
Length = 1346
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 10 FLASSVSPRKRSALSTXQKAVLHKYMLYIARRQLSHRRLTAS 135
F + +SP S ++ +KA + + RRQL H + TA+
Sbjct: 506 FSKNDISPTTSSGVADDKKATMRRRHDEARRRQLEHEQFTAN 547
>AL033536-6|CAK55187.1| 162|Caenorhabditis elegans Hypothetical
protein Y53C10A.15 protein.
Length = 162
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 390 SKISPSLYVLPSTWQVFNVAIASLPQTFAVLQHESNSYVLTHSWRSESKDS 542
SKI P+L + PS + VFN L + +L+H + + +SKDS
Sbjct: 33 SKI-PNLLMEPSKYFVFNGPFDKLSMDYFILRHPEFQRIAYNVTLKQSKDS 82
>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
protein.
Length = 1346
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 10 FLASSVSPRKRSALSTXQKAVLHKYMLYIARRQLSHRRLTAS 135
F + +SP S ++ +KA + + RRQL H + TA+
Sbjct: 506 FSKNDISPTTSSGVADDKKATMRRRHDEARRRQLEHEQFTAN 547
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,470,109
Number of Sequences: 27780
Number of extensions: 401019
Number of successful extensions: 1635
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1622
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -