Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C11
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.41 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    29   0.54 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    28   0.94 
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    27   2.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   3.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   8.8  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   8.8  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   8.8  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -1

Query: 441  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEF 319
            N+ M LPFYRG   YI+ I ++ D    E C K+  +  EF
Sbjct: 1148 NQNMSLPFYRGE--YIQLIDANQD-NYLEECLKIRSVLAEF 1185


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 441  NEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEFRS 313
            N+ + LPFYRG   YI+ I ++ D    E C K+  I  EF +
Sbjct: 1124 NQNLSLPFYRGE--YIQLIDANQD-NYLEECLKIRSILAEFEA 1163


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +1

Query: 157 IIAHHLLPSLNGHFV-ILYFISNSKAKSRKFSF----WRAKTSNLTLVECYFLIVNSASK 321
           ++ HH   S   + +  + F+++ K  + KF F    W   T  L + + +F+I N    
Sbjct: 145 LVLHHRFISFMLYIIGFVLFVASLKKGNYKFQFSQFCWTHMTLLLVVGQSHFMINNLFEG 204

Query: 322 LLWYLI 339
           L W+ +
Sbjct: 205 LFWFFV 210


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 477 NIAFLHHLSEVINEEMQLPFYRGVECYIENIR 382
           NIA L   ++   + M+ P +R V+ +++N+R
Sbjct: 265 NIADLRDRAQKAKDGMEAPLFRRVQLFMDNVR 296


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 389 TFVLQTILKPGNYVEN*IKYQRSLEALLTIKK*HSTNVRFDVLA-LQNENLRDL 231
           T  L   LK G YV+N   + +SL   L I   +  N    +L  L+N  +++L
Sbjct: 591 TLTLPLELKTGRYVDNISHFAQSLLYTLLISDRYGINTNQALLCYLENSTIKNL 644


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -1

Query: 465 LHHLSEVINEEMQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEFRSAI 307
           L H ++ +NEE+Q    + +E   +   S  D K  E    L +I  E +  I
Sbjct: 474 LFHKTQELNEELQSCLQKILEASADRNESKQDAKKREALYALKRIYPEVKGRI 526


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 399 YIENIRSSDDFKAWELCGKL 340
           Y+EN  SS D + WEL   L
Sbjct: 76  YVENAASSPDQRKWELLQNL 95


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 432 MQLPFYRGVECYIENIRSSDDFKAWELCGKLNQIPKEFRSAID 304
           + +P Y  +  Y+E + ++   K+  L GKL +  KEF   +D
Sbjct: 146 LDIPLYDRI-IYVEPVPATLSNKSLLLAGKLRKYLKEFLPYVD 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,001,460
Number of Sequences: 5004
Number of extensions: 39395
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)