Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_C10
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.24
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.3
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 1.7
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 2.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 3.9
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 24 6.9
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 24 6.9
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 24 6.9
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 24 6.9
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 24 6.9
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 24 9.1
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 24 9.1
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.1 bits (62), Expect = 0.24
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 264 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPL 103
PT++ T T ++ T T + +TTT+ + T + T T P + T+ LP+
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPM 154
Score = 25.0 bits (52), Expect = 3.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -1
Query: 258 LKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPL 103
++ET T L A T+ + TTT T TV T T P + + LP+
Sbjct: 145 MEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVE-TMTTPMVEAMTILPM 195
Score = 24.2 bits (50), Expect = 6.9
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -1
Query: 261 TLKETATNLLTTARTSLILPK---TTTLMETATNLSTTVHITWTVPKADLTSSLPL 103
T E T + T+ ILP TT ++ET T TV T T P + T+ P+
Sbjct: 68 TPMEETTTITPMVETTTILPMAAMTTPMVETTT--IPTVETT-TTPMVETTTITPM 120
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 1.3
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Frame = -3
Query: 199 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYF 116
DYN N N Y PI N Y+++ G PYF
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYF 150
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 1.7
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 279 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 136
LCW+WP K N L + L ILP T + N + W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 2.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 202 KDYNPNGNGYEPIDNGAYYVDRPQGRP 122
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.0 bits (52), Expect = 3.9
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 215 DVRAVVNRFVAVSLSVG-HSQQSEDENHEEF 304
+VR V NRFVAV L G DE ++F
Sbjct: 1056 NVRRVTNRFVAVKLDCGIDGNIKADEVSDDF 1086
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 279 LCWLWPTLKETATNLLTTARTS 214
+ W W TL TA +L+TA S
Sbjct: 1 MIWFWSTLLVTAIAVLSTANES 22
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 235 IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 149
+++ PY+ N D+N NGN P+ +Y
Sbjct: 370 VNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 24.2 bits (50), Expect = 6.9
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 283 LALLAMANAQGNGYEPIDNRPYI---VNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFK 113
+ LL +NAQ + P++ PYI + +DY +G++ ++D + +P
Sbjct: 104 IVLLMGSNAQNDPSSPLN--PYIRTIIKNRRDYAER-HGFK-----FEFLDLDEYKPSIG 155
Query: 112 PTPXPWCSRWEVKNIL 65
P PW +KN++
Sbjct: 156 DKPAPWAKIPMIKNVI 171
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 256 QGNGYEPIDNRPYIVNPPKDYNPNGNGY 173
QG G + D PY ++P Y P G Y
Sbjct: 186 QGAGVKA-DINPYNLSPYSQYGPEGTAY 212
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 6.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 283 LALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAY 149
LAL ++ Q Y I+ P N P +N N N + I AY
Sbjct: 86 LALESLKGIQSKWYGYIEYLPKTFNTPLYFNENDNAF-LISTNAY 129
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 24.2 bits (50), Expect = 6.9
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 12 HMKFLKYIVNTLFRY 56
H KFLK +VN LF +
Sbjct: 559 HWKFLKTVVNKLFEF 573
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 23.8 bits (49), Expect = 9.1
Identities = 14/52 (26%), Positives = 21/52 (40%)
Frame = -3
Query: 262 NAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT 107
N + N EP+ PPK+ N N + +P + V +P PT
Sbjct: 220 NEEVNNLEPVGQNESKQEPPKEENSNVSQEQP-EQAQPEVSAASEQPESNPT 270
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 23.8 bits (49), Expect = 9.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 233 NRFVAVSLSVGHSQQSEDENHE 298
NRF+ + L VG + ++ +NH+
Sbjct: 190 NRFLPIVLDVGTNNETHRKNHQ 211
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,649
Number of Sequences: 5004
Number of extensions: 32015
Number of successful extensions: 94
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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