Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_C10
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 32 0.13
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 1.2
02_04_0382 - 22501041-22501279,22501717-22501810 28 2.1
03_06_0471 + 34169562-34169892,34170121-34170347 27 3.7
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 27 3.7
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 27 4.9
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 4.9
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 27 6.5
01_06_0832 + 32291454-32291537,32291584-32291661,32292081-322928... 26 8.6
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 32.3 bits (70), Expect = 0.13
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +2
Query: 176 AVSIRVVVFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHRRK 340
A I +++G ++D ++F+ +S QS+DEN + H + +YH +K
Sbjct: 985 ACDIIRILYGEVHDHSPFDDKFLPLSFDAQIDSQSDDENDKSGHGRIKGNYHSKK 1039
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.1 bits (62), Expect = 1.2
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -3
Query: 256 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTP 104
QG Y+P R PP+ P Y P G Y +PQG+PY P P
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQP 290
Score = 26.2 bits (55), Expect = 8.6
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = -3
Query: 226 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKP 110
+PY P P P G Y P G Y P+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = -3
Query: 301 FFMIFVLALLAMAN-AQGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDR 137
F ++ A +A A +G P ++ + PP D P+ + Y+P + YY D
Sbjct: 16 FALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DP 74
Query: 136 PQGRPYFKPTPXPW 95
P Y+ P P P+
Sbjct: 75 PPSPDYYDPPPSPY 88
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3
Query: 244 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPXP 98
Y P P PP Y P+ GY P GAY +P + P P
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYP 101
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 253 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPT-PXP 98
G+G +N+ Y N PK +P NG Y P G+P++ P P P
Sbjct: 113 GHGNPNKNNQAYHRNGPKRRSPAANGTPSYPAAMPYHQHP-GQPFYYPVIPSP 164
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = -3
Query: 334 PVITRDHIKMKFFMIFVLALLAMANAQGNGYEPIDNRPYIVNPPKDYNPNGNGYEP 167
PV + + FMI+ ++L + N G P+D+ Y+ + P DY Y+P
Sbjct: 474 PVYLKAYYHDNGFMIYARSVLVIHNIAHQGRGPLDDFSYL-DLPVDYMDLFKLYDP 528
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.1 bits (57), Expect = 4.9
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -3
Query: 244 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTP 104
Y P + P V PP Y P +G P N + Y + P GRP P P
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPP 442
>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
Length = 634
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 155 CILRGPSPRPTLLQAYPFXLVLAVGSK 75
C+L P RPT+ + Y L+ A+G K
Sbjct: 581 CVLSAPKERPTMFEVY--QLMRAIGEK 605
>01_06_0832 +
32291454-32291537,32291584-32291661,32292081-32292804,
32294259-32294446,32294623-32294682,32295516-32295959
Length = 525
Score = 26.2 bits (55), Expect = 8.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 211 NPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYF 116
+P +D NG G Y RPQ RPYF
Sbjct: 25 HPAEDLLVVVNGKRAGTTGMYATTRPQTRPYF 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,238,271
Number of Sequences: 37544
Number of extensions: 230631
Number of successful extensions: 623
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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