Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C08
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   3.0  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   7.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.3  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = -3

Query: 763 ADFDQLLEDMSAAFRNLED*TLYCL*NIIVIETLKFTEINFN-VKRKYSE*PKLILCVVA 587
           A FD +L++     + L+   L      I+   L   +   N VK  +++  +L+ C   
Sbjct: 427 ASFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELV-CSFV 485

Query: 586 NIIDILSSQHRL*LRTKECNVIIEL 512
           N + ++ S     LRT  C  I+ L
Sbjct: 486 NNVAVMESSSEKQLRTSRCLKIVRL 510


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 372 KRQRAPLYIFRSRCSDAFY*RTCV 301
           KR RAPLYI  + CS  ++ R+ +
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFI 30


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 22  SIQKQSPLHASTLSHAPARPSPANTVSIAXLH 117
           S  K SP+ AS +   P+ PSP   +  A L+
Sbjct: 683 SPMKISPIRASPVKTIPSSPSPTTNIFSAPLN 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,241
Number of Sequences: 5004
Number of extensions: 57994
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)