Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C07
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    48   1e-06
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    27   3.9  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
 Frame = -2

Query: 771 GNFYVKFDVVFPENHFANEXQXXQIETILPPRPAFVMPTGEDVEEVNLMDYFTPSESSR- 595
           GN Y++F V FPE +FA   Q   +E  LPPR     P     EE  ++    P+E  R 
Sbjct: 319 GNLYIRFHVDFPEPNFATPEQLALLEKALPPRKIESAPKNAHTEEC-VLATVDPTEKVRI 377

Query: 594 -----GREEAYASDDEEHMHACPGVQCAHQ 520
                        +DE+     PGVQCA Q
Sbjct: 378 DNNVDPTTATSMDEDEDEEGGHPGVQCAQQ 407


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 687 LPPRPAFVMPTGEDVEEVNLMDY 619
           +P + A V+P G++ EE N++DY
Sbjct: 45  IPSKVAGVIPRGKEKEEWNVLDY 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,632
Number of Sequences: 5004
Number of extensions: 43238
Number of successful extensions: 108
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)