Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C05
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   4.8  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 722 RPEILPEIKGXQCSITELCNFTNLKDVKS 636
           RPEI PE +G  CSI ++ +   L D KS
Sbjct: 630 RPEISPEPRGINCSIDKI-HSLYLNDKKS 657


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = +2

Query: 5   LRHKVWXGVMGLQSS*TSPKDPXKLEGEYATS*YYYIVFGFTEYFSGHF 151
           L++ +W G++G+ +   S K    + G         +V+     F GH+
Sbjct: 188 LQNPLWVGLLGMPTESLSEKTKNAISGALLVKHQSLVVYTSDSNFEGHY 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,393
Number of Sequences: 5004
Number of extensions: 61449
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)