Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C05
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    33   0.31 
08_02_1594 + 28111622-28111833,28111979-28112696                       31   0.94 
02_01_0103 - 763409-763616,763980-764717,764809-765023                 29   5.0  
03_01_0296 + 2284385-2285629,2287632-2288594                           28   8.8  

>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = -2

Query: 689 QCSITELCNFTNLKDVKSVY--KLNNLKSDEGLLDIIVSRMTTKNFVSY*N*VMQFLLPT 516
           +C   EL N + ++ V + Y  ++ + K  + +LD+I+S+ T +NFV+      Q L+  
Sbjct: 513 ECYFNELINRSMIQPVHTQYDGRVYSCKVHDMILDLIISKATEENFVTIVTDRKQMLVSK 572

Query: 515 PQSYTHIICN-SELMKCLYPGCTSQFADLDVYIIINRHPALSS 390
            + +     N  +    LY   T+    L+++    + P LS+
Sbjct: 573 DKVHRLSFYNYGQEDVTLYSMVTTHVRSLNIFRYSEQMPPLSN 615


>08_02_1594 + 28111622-28111833,28111979-28112696
          Length = 309

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +1

Query: 142 WTFLCIYLLPYSLGYSA*LVLR--IIKEYP 225
           WT  C+YL+ + L +S  LVL+  ++K+YP
Sbjct: 193 WTLGCVYLIGHCLSWSGWLVLQAPVLKKYP 222


>02_01_0103 - 763409-763616,763980-764717,764809-765023
          Length = 386

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 142 WTFLCIYLLPYSLGYSA*LVLR--IIKEYP 225
           WT  C++LL + + +S  LVL+  ++K YP
Sbjct: 193 WTLGCVFLLGHCVSWSGWLVLQAPVLKRYP 222


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 39  YRVHRRHLKILXN*KENMLPLSIIILFLVSLNISVDIFMYLF 164
           YR+ R+    L N K   L ++ +I+F+V+     + FM+LF
Sbjct: 369 YRIPRKSTPNLVNGKNVDLIITFVIVFMVTAMDICEFFMHLF 410


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,019,615
Number of Sequences: 37544
Number of extensions: 319841
Number of successful extensions: 541
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)