Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C05
         (732 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-3|AAB94192.1|  183|Caenorhabditis elegans Hypothetical ...    40   0.002
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    29   3.4  

>AF039041-3|AAB94192.1|  183|Caenorhabditis elegans Hypothetical
           protein W03F8.4 protein.
          Length = 183

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
 Frame = -2

Query: 701 IKGXQCSITE-LCNFTNLKDVKSVYKLNNLKS-DEGLLDIIVSRMTTKNFVS 552
           IKG    + E L  F N+  +K VY++ N    +EGL D IVSRM +K+FVS
Sbjct: 132 IKGTPVPLMEGLPKFANVNMIKKVYQVGNPAFVEEGLSDHIVSRMVSKDFVS 183


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 722 RPEILPEIKGXQCSITELCNFTNLKDVKSVYKLNNLKSDEGL 597
           +P +L EI G +C    L NFTN+ +V ++++L   K  + L
Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAKSL 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,920,300
Number of Sequences: 27780
Number of extensions: 335324
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)