Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C02
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1376 - 26528208-26528279,26529690-26529986                       64   2e-10
01_06_0963 + 33441731-33442096,33442175-33442270                       40   0.003
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    39   0.006
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129...    36   0.030
07_03_1180 - 24601631-24602142,24602518-24602581,24602811-246028...    29   4.5  
03_04_0091 + 17241555-17241602,17241685-17241822,17241901-172421...    28   7.9  

>08_02_1376 - 26528208-26528279,26529690-26529986
          Length = 122

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
 Frame = -1

Query: 809 SFMTXEGVQLQGAVKIMXKLNSLTFXXITRIVTAVDSQPMF-DGGVLINVLGRLKCDEDP 633
           S +T EG Q  GA  I  KL SL F      +  VD QP    GG+L+ V G L+   D 
Sbjct: 33  SMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDE 92

Query: 632 -PHLYMQTFVLKPLGDSFYVQHDIFRL 555
            P  + Q F L P G +FYVQ+D+FRL
Sbjct: 93  HPLKFSQMFQLLPAGGNFYVQNDMFRL 119


>01_06_0963 + 33441731-33442096,33442175-33442270
          Length = 153

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -1

Query: 815 ETSFMTXEGVQLQGAVKIMXKLNSLTFXXITRIVTAVDSQPM--FDGGVLINVLGRLKCD 642
           +TS ++ EG  + GA +I  KL  L F      V  VD QP   F GG+L+ V G L+  
Sbjct: 53  QTSMLSFEGHMVAGAEEIGRKLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQLA 112

Query: 641 EDPPHLYMQTF 609
            +   L    F
Sbjct: 113 GEEHQLRFSQF 123


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 716 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 558
           + AVD+Q    GGV + V G L   +D    + Q+F L P    ++V +DI R
Sbjct: 86  IKAVDAQESLGGGVTVLVTGHLTGSDDVRREFSQSFFLAPQEKGYFVLNDILR 138


>02_03_0315 -
           17610605-17610855,17611304-17611370,17612876-17612941,
           17613037-17613158,17613245-17613428,17614262-17614494,
           17614580-17614913,17615043-17615186,17615303-17615344
          Length = 480

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -1

Query: 716 VTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFYVQHDIFR 558
           +  VDSQ    GGV + V G L   +     + Q+F L P    ++V +D+FR
Sbjct: 78  IKTVDSQESLGGGVTVLVTGHLTVRDGVCREFSQSFFLAPQEKGYFVLNDMFR 130


>07_03_1180 -
           24601631-24602142,24602518-24602581,24602811-24602876,
           24602949-24603070,24603170-24603344,24603466-24603701,
           24603781-24604129,24605009-24605146,24605242-24605289
          Length = 569

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -1

Query: 707 VDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPL-GDSFYVQHDIFR 558
           VD+Q   +GGV I V G +  +    H + Q+F L P     ++V +D+ R
Sbjct: 83  VDAQLSLNGGVHILVTGSIGHNGTMRHRFSQSFFLAPQESGGYFVLNDMLR 133


>03_04_0091 +
           17241555-17241602,17241685-17241822,17241901-17242198,
           17242281-17242513,17242632-17242827,17242911-17243032,
           17243100-17243165,17243373-17243436,17243851-17244176
          Length = 496

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 728 ITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGDSFY-VQHDIFR 558
           +T I TA D+Q     GVLI V G L   E     + Q+F L P     Y V +DIFR
Sbjct: 77  LTEIETA-DAQLSHQDGVLIVVTGSL-TSEGICRRFTQSFFLAPQESGGYVVLNDIFR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,935,900
Number of Sequences: 37544
Number of extensions: 388569
Number of successful extensions: 648
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)