Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C01
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   1.7  
UniRef50_Q4T642 Cluster: Chromosome undetermined SCAF8938, whole...    33   9.1  
UniRef50_Q4SV01 Cluster: Chromosome undetermined SCAF13832, whol...    33   9.1  
UniRef50_Q1NQ05 Cluster: Cytidyltransferase-related:Probable nic...    33   9.1  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 596 AGWCYLPVRTHKRSYHQ 546
           A W YLP RTHKRSYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q4T642 Cluster: Chromosome undetermined SCAF8938, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF8938,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 912

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  FNYFPQKNNNYDYXVIKIKNENYKFAKYYVTL 194
           +N   ++ N Y   ++++K+ENYK A  Y TL
Sbjct: 191 YNKLREERNTYSDELLRVKDENYKLAMRYATL 222


>UniRef50_Q4SV01 Cluster: Chromosome undetermined SCAF13832, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF13832, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 1167

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 99  FNYFPQKNNNYDYXVIKIKNENYKFAKYYVTL 194
           +N   ++ N Y   ++++K+ENYK A  Y TL
Sbjct: 170 YNKLREERNTYSDELLRVKDENYKLAMRYATL 201


>UniRef50_Q1NQ05 Cluster: Cytidyltransferase-related:Probable
           nicotinate-nucleotide adenylyltransferase; n=1; delta
           proteobacterium MLMS-1|Rep:
           Cytidyltransferase-related:Probable
           nicotinate-nucleotide adenylyltransferase - delta
           proteobacterium MLMS-1
          Length = 245

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -3

Query: 679 SKASSIVTIQRRPHPSNRNALLLYGRNRQGGVTYPCGLTRGPTTSKK 539
           ++ASS   +  RP P+  N  L   R+RQGG+ YPC +   P ++ +
Sbjct: 170 AEASSPGAVAPRP-PATTNPQLRPWRHRQGGLIYPCPVAAIPVSASE 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,066,726
Number of Sequences: 1657284
Number of extensions: 10809969
Number of successful extensions: 20746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20710
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)