Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_C01
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    26   4.6  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    26   6.1  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   8.0  

>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -3

Query: 697 PP*DISSKASSIVTIQRRPHPSNRNALLLYGRNRQGGVTYPCGLTRGPTTSKK 539
           PP +I +K  S    +RRP   +R    L G N      Y       P  S K
Sbjct: 13  PPPEIGNKQKSKTPTERRPEGISRELYSLLGENSAPLAIYQKKFKEKPKVSHK 65


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 685 ISSKASSIVTIQRRPHPSNRNALLLYGRNRQGGVTYP 575
           +++ A  + T+   PHP N   +LL G N Q   + P
Sbjct: 85  VTATAQELSTLN--PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 120 NNNYDYXVIKIKNENYKFAKYYVTL*YIIIFIHTYI 227
           N NY +    + N N++ + +   L  II+F++T +
Sbjct: 5   NRNYSHKNFNVTNNNFQVSCFNPILLKIILFLNTIV 40


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 333 IPLIVVFINHYCGLVLDVLMSLVCRSSAV-CASNYVICMY 217
           + +   F+ HY  LVL  L+  +C      C S Y+   Y
Sbjct: 122 VTIFTCFVRHYWSLVLTRLLLGICEGGFFPCLSLYISMTY 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,473
Number of Sequences: 5004
Number of extensions: 47411
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)