Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_B24
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533495-1|CAG38526.1| 142|Homo sapiens MRPL42 protein. 58 2e-08
BC040240-1|AAH40240.1| 142|Homo sapiens mitochondrial ribosomal... 58 2e-08
AK000285-1|BAA91054.1| 142|Homo sapiens protein ( Homo sapiens ... 58 2e-08
AF135160-1|AAF43784.1| 142|Homo sapiens unknown protein. 58 2e-08
AB051626-1|BAB54953.1| 51|Homo sapiens mitochondrial ribosomal... 31 1.5
AL356115-1|CAI40902.1| 588|Homo sapiens KIAA1128 protein. 30 3.5
AF241785-1|AAG44473.1| 566|Homo sapiens NPD012 protein. 30 3.5
AB032954-1|BAA86442.1| 588|Homo sapiens KIAA1128 protein protein. 30 3.5
AK098126-1|BAC05240.1| 133|Homo sapiens protein ( Homo sapiens ... 29 6.1
AF072441-1|AAD40846.1| 2220|Homo sapiens calcineurin binding pro... 29 8.1
AB002328-1|BAA20788.2| 2224|Homo sapiens KIAA0330 protein. 29 8.1
>CR533495-1|CAG38526.1| 142|Homo sapiens MRPL42 protein.
Length = 142
Score = 57.6 bits (133), Expect = 2e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = -3
Query: 306 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 127
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 126 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 34
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>BC040240-1|AAH40240.1| 142|Homo sapiens mitochondrial ribosomal
protein L42 protein.
Length = 142
Score = 57.6 bits (133), Expect = 2e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = -3
Query: 306 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 127
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 126 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 34
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AK000285-1|BAA91054.1| 142|Homo sapiens protein ( Homo sapiens
cDNA FLJ20278 fis, clone HEP03158. ).
Length = 142
Score = 57.6 bits (133), Expect = 2e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = -3
Query: 306 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 127
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 126 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 34
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AF135160-1|AAF43784.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 57.6 bits (133), Expect = 2e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = -3
Query: 306 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 127
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 126 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 34
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AB051626-1|BAB54953.1| 51|Homo sapiens mitochondrial ribosomal
protein L42 protein.
Length = 51
Score = 31.5 bits (68), Expect = 1.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 126 KQLSNLTLTTEHRWYPRAR 70
+QLS + TT+HRWYP R
Sbjct: 33 EQLSKMFFTTKHRWYPHGR 51
>AL356115-1|CAI40902.1| 588|Homo sapiens KIAA1128 protein.
Length = 588
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 222 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 61
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 460 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 513
>AF241785-1|AAG44473.1| 566|Homo sapiens NPD012 protein.
Length = 566
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 222 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 61
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 438 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 491
>AB032954-1|BAA86442.1| 588|Homo sapiens KIAA1128 protein protein.
Length = 588
Score = 30.3 bits (65), Expect = 3.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -3
Query: 222 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 61
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 460 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 513
>AK098126-1|BAC05240.1| 133|Homo sapiens protein ( Homo sapiens
cDNA FLJ40807 fis, clone TRACH2009268. ).
Length = 133
Score = 29.5 bits (63), Expect = 6.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 306 KIVITDDGSTIVALHQDYDFPYEHSR 229
++ + DG TIV H D YEH++
Sbjct: 90 ELAVISDGRTIVCYHHSVDISYEHTK 115
>AF072441-1|AAD40846.1| 2220|Homo sapiens calcineurin binding protein
cabin 1 protein.
Length = 2220
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 297 ITDDGSTIVALHQDY-DFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNE 148
+T T + DY H +A P++ S+D+T + ++D + FNE
Sbjct: 1345 LTSPPYTATPIDHDYVKCKKPHQQATPDDRSQDSTAVALSDSSSTQDFFNE 1395
>AB002328-1|BAA20788.2| 2224|Homo sapiens KIAA0330 protein.
Length = 2224
Score = 29.1 bits (62), Expect = 8.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 297 ITDDGSTIVALHQDY-DFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNE 148
+T T + DY H +A P++ S+D+T + ++D + FNE
Sbjct: 1349 LTSPPYTATPIDHDYVKCKKPHQQATPDDRSQDSTAVALSDSSSTQDFFNE 1399
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,935,308
Number of Sequences: 237096
Number of extensions: 918580
Number of successful extensions: 1423
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -