Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B19
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   2.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   6.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.0  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   6.0  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   7.9  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 469 FKFCPSWVFRRSSTARIPV*PRSWITTSRCTYPRLCKKPSLKSTR 335
           FKF P W+F  S  A + +   +  +   CT    C K  L+S +
Sbjct: 454 FKFTPLWIFESSDLAALDIAWTADNSLILCTRNGTCWKRELRSKK 498


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -3

Query: 614  LPNEI--NGLDGILQKLADGYDLTAELDKMFSTKVRVTVPKFKIETEIDLLQVLPKLGIQ 441
            LP E+  +GL  IL  L+D   L+    +  S  +R+    FK+E    LLQ L  L   
Sbjct: 1434 LPKELLQSGLRPILMNLSDHNKLSVNGLEGLSRLLRLLTNYFKVEIGRKLLQHLNVLSDS 1493

Query: 440  AIFNRQNSGLTK 405
             +    +  L K
Sbjct: 1494 KVLETASLSLLK 1505


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 265 ASMPTDPSSTSSWARNASLCSSANTVDEIES 173
           ++ PT  S TSS A ++SL SS+ T   + S
Sbjct: 101 SASPTSSSLTSSSATSSSLASSSTTSSSLAS 131


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 653 MAYEGXDASMVIVLPNEINGLDGILQKLADGYDLTAELDKMFSTKVRVTVPKF 495
           M  +G  A     + N IN  + +  KL+D  +L  E +K +ST    T+P F
Sbjct: 492 MLNDGSTAPAKNDIRNVIN-TNNLDAKLSDESELMIEKNKSYSTPASSTIPTF 543


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 682 ATTSMRSYLKWRMKVTMPAWLSCCRTKLMAWTGYC 578
           AT    SY+ W +      WLSC +  +  + GYC
Sbjct: 151 ATLPELSYIGWAIAF----WLSCFKYLVPVYAGYC 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,060
Number of Sequences: 5004
Number of extensions: 44063
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)