Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B17
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   1.2  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    27   1.5  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.5  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   6.2  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   6.2  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   8.2  

>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 389 FYGFCTNFYCLPCRHFQSESI 451
           FYG  TN+    CRH   E I
Sbjct: 474 FYGLTTNYLLAHCRHMHGEKI 494


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 10/53 (18%)
 Frame = -2

Query: 421 QAIKVGTKTVKPVLSSSHAEARNRVLS------LYKA----WYRQIPYIVKDY 293
           +AIKV  +T  P  +++  EA +++++      LY+     W+RQIPY +  +
Sbjct: 142 EAIKVRVQTSNPRFANTTREAWSKIVTNEGFGTLYRGLAPLWFRQIPYTMMKF 194


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 372 DDDSTGFTVFVPTFIACLADIFKVNQSVTRSNTKIFSI 485
           D D    T F+ TFI  ++D+ +   S++ +NT +FSI
Sbjct: 339 DRDIKKATDFITTFINKMSDVKEFKPSISTANT-LFSI 375


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = -2

Query: 379  SSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIKNKHVTDIRVIDM 200
            + S+AE  N  LSL K WY +   ++ D  +  S+ +C   + EL  +   VTD    ++
Sbjct: 2733 AESYAETNN--LSLIKVWYHEACRVLLDRLV--SQKECSWGMTEL--QKVIVTDFGEFEV 2786

Query: 199  LVI 191
             VI
Sbjct: 2787 SVI 2789


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 131  HNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFFQFLSTLCF*LGNVIIL 301
            +N  LL  + H    + +  NN  +  S I   FVLN+ F   L+T+C  LGN++ L
Sbjct: 1586 YNAYLLDFFTHGSVDMLIEQNN--LKQSEI--WFVLND-FSLVLATICSCLGNLLNL 1637


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +2

Query: 116 WFEVGHNVPLLFPYVHRLFQLHLTLNNQHINDSNISHMFVLNEEFF 253
           W E+       +  + RL+   L+    HI     S   VL EE++
Sbjct: 102 WIELWDLESRTWDLIQRLYSFRLSEQQGHIQSHAFSSRAVLEEEYY 147


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 33  SFVQSQSPNHSFPAKHFE 86
           S +Q+ SP+   PAKH E
Sbjct: 241 SDIQTSSPSQDIPAKHLE 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,945,826
Number of Sequences: 5004
Number of extensions: 37767
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)