Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B17
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical p...    67   6e-12
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    32   0.20 
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      32   0.20 
Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threon...    29   1.8  
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine re...    27   5.6  
AF039047-7|AAK95883.1|  187|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z99281-56|CAB16513.1|  131|Caenorhabditis elegans Hypothetical
           protein Y57G11C.12b protein.
          Length = 131

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
 Frame = -2

Query: 439 LKMSARQAIKVG---TKTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQ 269
           +  +A + ++ G    +TV P+ S++ AEAR  VL+ YK + R  P    D+ +      
Sbjct: 1   MSATAGRVVRAGQHAVRTVAPIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHDMPLG 60

Query: 268 C-REKLKELFIKNKHVTDIRVIDMLVIKGQMELKESVNIWKQKGHIMAY-FKPTEEPKPK 95
             R  +K+ F KN H+TD+RV+D LV +    +K     +    H+  Y F    E KPK
Sbjct: 61  VFRAVIKKQFTKNGHLTDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLFAENVEAKPK 120

Query: 94  NXLSKCFAGNE 62
           + LSK   G E
Sbjct: 121 DFLSKFLNGKE 131


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 143 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 307
           +LF  +     L+  L+N H+N S ISH F L N+E    +  FL TL F L    I  +
Sbjct: 99  ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 157

Query: 308 IGDLT 322
             + T
Sbjct: 158 FNETT 162


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 143 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 307
           +LF  +     L+  L+N H+N S ISH F L N+E    +  FL TL F L    I  +
Sbjct: 92  ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 150

Query: 308 IGDLT 322
             + T
Sbjct: 151 FNETT 155


>Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical
           protein F15A2.6b protein.
          Length = 835

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -2

Query: 412 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 236
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 235 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 146
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>Z70207-5|CAA94127.2|  914|Caenorhabditis elegans Hypothetical
           protein F15A2.6a protein.
          Length = 914

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -2

Query: 412 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 236
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 235 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 146
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>AF316542-1|AAG50270.1|  914|Caenorhabditis elegans serine/threonine
           kinase SAD-1 protein.
          Length = 914

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -2

Query: 412 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 236
           KV  K V K  LS S  +   R +++ K    + P+++  YD+        E  K L++ 
Sbjct: 72  KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122

Query: 235 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 146
            +HV+   + D LV KG++  KE+   ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
 Frame = +2

Query: 101 FRFFCWFEVGHNVPLLFPYVHRLF---QLHLTLNNQHINDSNISHMFVLNEEFFQFLSTL 271
           F F  WFE    + L++PY + L      H+   N   +D  I           ++  T 
Sbjct: 69  FYFGAWFECWLGLVLVWPYKNGLVLVEDTHMKFTNFETSDRTIM------AHITKYPETT 122

Query: 272 CF*LGNVIILHYI 310
           C   G+ +I HY+
Sbjct: 123 CLLFGSFLIWHYL 135


>AF002198-8|AAF99931.2|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 3 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 AIMCPFCFHMFTDSFNSI*PLITSISMTRISVTCLFL 239
           AI  P  FH + DS+ SI  L+ +IS++      ++L
Sbjct: 115 AIYTPIMFHKYRDSYPSIIILMLAISLSMFENLLMYL 151


>AF039047-7|AAK95883.1|  187|Caenorhabditis elegans Hypothetical
           protein K11D12.7 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 392 YGFCTNFYCLPCRHFQSESISDSIQHKN 475
           Y  C+NF C+P  +F     SDS+  KN
Sbjct: 70  YSACSNF-CIPMDYFTCPGGSDSVAGKN 96


>Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 122 EVGHNVPLLFPYVHRLFQ 175
           E GHNV  L P +HR ++
Sbjct: 49  EAGHNVTFLMPIIHREYE 66


>Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 122 EVGHNVPLLFPYVHRLFQ 175
           E GHNV  L P +HR ++
Sbjct: 49  EAGHNVTFLMPIIHREYE 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,484,503
Number of Sequences: 27780
Number of extensions: 203779
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)