Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B16
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    49   6e-07
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    34   0.018
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   6.2  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.2  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   8.2  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   8.2  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 48.8 bits (111), Expect = 6e-07
 Identities = 30/108 (27%), Positives = 52/108 (48%)
 Frame = -3

Query: 572 IQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGKPNDKAKRDFTLRKGTGVAIPVWAF 393
           ++ M Y   VV E LRL PP      + +  Y + K       D+T+ K   V   ++  
Sbjct: 366 MEKMTYTRAVVKECLRLRPP------VLMVPYRVKKAFPITP-DYTVPKDAMVIPTLYGA 418

Query: 392 HRNPEFFPDPLKFDPERFSEENKHNIKPFAYLPFGVGPRNCIGSRFAL 249
             + + +P+P  F+P+R++        P  ++ FG GP  C+G R+A+
Sbjct: 419 LHDSKVYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYAV 466


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
 Frame = -3

Query: 581 YNSIQNMVYLDMVVSELLRLWPPGVSMDRICVQDYNLGKPNDKAKRDFTLRKGTGVAIPV 402
           ++  ++M  L+ V+ E LRL PP  S  R   +D  L  P  K      +     +    
Sbjct: 330 FDQYKDMPLLNYVIQETLRLHPPIHSHMRKVKRD--LPVPGSK----IVIPANNYLLAAP 383

Query: 401 WAFHRNPEFFPDPLKFDPERFSE-----ENKHNI--------KPFA--YLPFGVGPRNCI 267
                  E+F     FDP+R+++     EN   I        K  A  YLPFG G   CI
Sbjct: 384 GLTATEEEYFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCI 443

Query: 266 GSRFA 252
           G +FA
Sbjct: 444 GEQFA 448


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 296 VDTRKA*CCVCSPLRTF 346
           V+T +A CC+CS L  F
Sbjct: 595 VETGRAICCICSSLHKF 611


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 406 PYGLSTETRNSSRTP*NSIPKGSQRRTNTTSSLS 305
           P   S+ T  SS    +SIP  S   ++T+SSLS
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLS 255


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 275 NCIGSRFALCEVKVMAYQLLQHMEISP 195
           NC+GS   + ++      LL HM+++P
Sbjct: 248 NCLGSSLDVKKLSKQRETLLSHMQVNP 274


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 452 PCHLVSPSCSLERRFYPWRHLAATALGVLKQPYP 553
           P  L SPS    + FYP    + ++ G+ K P P
Sbjct: 404 PMELPSPSTVYHQVFYPPTSTSVSSYGLGKTPQP 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,721
Number of Sequences: 5004
Number of extensions: 54903
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)