SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B13
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    36   0.006
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    35   0.010
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    32   0.072
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    31   0.22 
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.29 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    30   0.38 
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.38 
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    29   0.89 
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    29   0.89 
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    28   1.2  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    28   1.2  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    28   1.6  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    27   2.1  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   3.6  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    27   3.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   3.6  
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    26   4.7  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    26   4.7  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    26   6.3  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   6.3  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   6.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   6.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.3  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    25   8.3  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.3  

>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
 Frame = -1

Query: 496 IEHHTKEFHKTLEQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 326
           I+   K     LEQ+  +L ++++A++    ++ + D S S   +L A AK    A  DA
Sbjct: 98  IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154

Query: 325 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 212
              A E   +++ +IER+A    K A  + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
 Frame = -1

Query: 466 TLEQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 296
           T+E  ++SL KSK +     F +  ++  + +L   N + + L   + +A  KA+++LEQ
Sbjct: 8   TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65

Query: 295 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 164
           +    +   E L K H +    E+   + +EKL A ++   + S++L
Sbjct: 66  TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 32.3 bits (70), Expect = 0.072
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
 Frame = -1

Query: 319 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVS 149
           K KE +E   Q ++ +ER  E LRK     +       EK  A  +   ++S    +K+ 
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKEECEKSWLEQQKLY 187

Query: 148 SNVQETNEKLAPKIQGRLRRLREEHPGGDQEDPGGRQRQAVSVDI 14
            ++++ N     K+  ++R L+      D +     Q ++  +D+
Sbjct: 188 KDMEQENASTIQKLTSKIRELQASQLDHDLQ---ASQNESAGLDV 229


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 30/131 (22%), Positives = 53/131 (40%)
 Frame = -1

Query: 613 PHSVSRQYIMAAKFVVLFACIALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTK 434
           P S S   + A    +      L +   V R    F + +EH+     K+LE+Q + L +
Sbjct: 171 PSSSSCNLVNANSLDIYLNINNLKKSKSVPRLRGQFMEPVEHN-HPLSKSLEEQSSFLEQ 229

Query: 433 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRK 254
           SKDA     A      S+     +   S + +L   N K++ +L+    ++ R       
Sbjct: 230 SKDASSNLTACNRSGSSLSSNFYSSRLSKKTSLASLN-KSRASLQHKIMSLSRNIIRRVF 288

Query: 253 AHPDVEKNATA 221
             P+V  + +A
Sbjct: 289 HKPEVHLDPSA 299


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 17/81 (20%), Positives = 38/81 (46%)
 Frame = -1

Query: 367 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 188
           N  + ++  AL +   KA + LE+  ++ E + EE+   H    +  T+ +   +   + 
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396

Query: 187 TVQESQKLAKKVSSNVQETNE 125
            +QE  ++ K +    Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/85 (24%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
 Frame = -1

Query: 319 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 140
           K+++ LE S Q +E    E +   P+V++     +EK ++ V+   +E +K+++ + S+ 
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-EKISRNLRSSS 189

Query: 139 QE----TNEKLAPKIQGRLRRLREE 77
           +     T +  +PKIQ  +   +E+
Sbjct: 190 RSISPVTEQPQSPKIQPVIPEKKEK 214


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 400 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 263
           KDG+++   +LN FAK L  +    + +A +   +    IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -1

Query: 421 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 266
           +D + A+ +   SVLQ+L+   + +QG LG   N     AL Q + QN++   E
Sbjct: 79  EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
 Frame = -1

Query: 310 EALEQSRQNIE-RTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 134
           +  E++ + I+ R+ EEL++A   + + A   +EK +       + + K+ +K +    +
Sbjct: 28  DQFEETEEEIKKRSPEELKQAIEALREKAKEKKEKERILALEEKKTNYKILQKSNDETAQ 87

Query: 133 TNEKLAPKIQGRLRRLREEHPGGDQEDPGGRQRQAVSVDIE 11
              K+  + Q RLR L++      Q+     QR+ +  +IE
Sbjct: 88  AMRKM--QDQARLRDLQKIR---QQKAEDAEQRKKILAEIE 123


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 3/147 (2%)
 Frame = -1

Query: 526 RRDAPDFFKDIEHHTKEFHKTLEQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 356
           ++   DFFK +    ++ H TL ++ NSL+    +K        +  G   +  +LN   
Sbjct: 56  KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115

Query: 355 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 176
           + LQG +  A          S       + E       V +N  + R+ L   V  ++Q 
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167

Query: 175 SQKLAKKVSSNVQETNEKLAPKIQGRL 95
              L +     V++    L P I G L
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP-ISGYL 193


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 24/88 (27%), Positives = 45/88 (51%)
 Frame = -1

Query: 496 IEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 317
           IE   K F K ++   NS  K+ +A  F     +G++  ++ + A  ++L   L +    
Sbjct: 73  IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125

Query: 316 AKEALEQSRQNIERTAEELRKAHPDVEK 233
               +EQ+R   E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = -1

Query: 466 TLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 305
           T++ +  SL K  D     +  ++  ES L  L      L  A      L D+  KAK  
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411

Query: 304 LEQSRQNIERTAEE 263
           LEQ+R  +ERT  E
Sbjct: 412 LEQARIELERTQRE 425


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 289 ASTVPKPPWPCRSRLRALPG 348
           AST+ K PWP  + L  +PG
Sbjct: 38  ASTLEKEPWPASTALLVMPG 57


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 520 DAPDFFKDIEHHTKEFHKTLEQ--QFNSLTKSKDAQDFSKAW 401
           D   +F D++ H K FH   E+  +   +  +K   D  K W
Sbjct: 665 DMKSYFSDLDRHMKYFHAMQEKDAELIEMAFAKKKADVRKEW 706


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -1

Query: 352 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 197
           S++  L + N + KE +E     +      RT +E        EKN   LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 22/74 (29%), Positives = 32/74 (43%)
 Frame = -1

Query: 391 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 212
           S  +   + A  K L GA      KAKE  ++ R   +RTA E+RK    +E+     R 
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199

Query: 211 KLQAAVQNTVQESQ 170
           +  A  Q    + Q
Sbjct: 200 ERAAEAQRVAGKEQ 213


>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 484 TKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQ-GALGDA 326
           +K+   + E+Q   +T      DFS   K   +     L+AF K L+  + GDA
Sbjct: 89  SKKSSASAEEQTEDITTESGELDFSSMKKKKKKKKSADLSAFEKELEASSTGDA 142


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = -1

Query: 298 QSRQNIERTAEELRKAHPDVE-KNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEK 122
           ++RQ  E  A+ +RK+ PDV  KN   L     + ++++V    +    V+S++   +  
Sbjct: 284 ENRQFSEYVADRIRKSFPDVSFKNLHVL-----SCMEDSVMSPFRELGSVTSSMSSLSPI 338

Query: 121 LAPKIQGRLRRLREEHPGGDQE 56
           L       L++L+E +  G++E
Sbjct: 339 LMDSFGDDLQKLKETY--GEEE 358


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 556 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLEQQFNSLTKSKDAQDFSKAWKDGSESV 380
           C  + +G  +RR  P +++ I      ++ KTL + FN+  + +++  + KA ++G   V
Sbjct: 13  CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72

Query: 379 LQQL 368
             Q+
Sbjct: 73  NNQI 76


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
 Frame = -1

Query: 331 DANGKAKEALE-QSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQ--NTVQESQKLA 161
           D     K+ L+ +S   +E TA   RK     +K+    + +  + +Q  NTVQ+    +
Sbjct: 272 DFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQKENTVQQEASSS 331

Query: 160 KKVSSNVQETNEKLAPKIQGRLRRLREEHPGGDQED 53
           ++ +       ++   +I+ +   ++EE   G++E+
Sbjct: 332 EEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEE 367


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
 Frame = -1

Query: 490 HHTKEFHKTLEQQFNSLTKSKD--AQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 317
           +H K+ H +L    N   KS     ++  K++K    ++ + L      +QG+  +   +
Sbjct: 261 YHEKKTH-SLVCNLNGERKSFGDFVENEVKSYKHEYANICESLRRALVLIQGSCTEKILR 319

Query: 316 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREK-----LQAAVQNTVQES----QKL 164
            KE +    + +++  E  R +H + E + T  + K     L+ AV+    E     ++ 
Sbjct: 320 FKEKILDLLE-MKQQEENDRISHIEYENDLTVKKLKRRISELEMAVKEYESEKSYSEKEY 378

Query: 163 AKKVSSNVQETNEKLAPKIQGRLRRLREEH 74
            +K+SS   E  +KLA     R + L+EEH
Sbjct: 379 EEKISSLRIELEDKLAEIDMLRNKLLKEEH 408


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
 Frame = -1

Query: 310 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKV------- 152
           + + QS  ++ RTA  L      VEK A+ +  ++   +Q+ V  +   A  V       
Sbjct: 643 DQVRQSPTSMIRTASGLTNRIVSVEKPASVMNPEIDKQIQDQVALATNSAMSVLTLLIDA 702

Query: 151 ---SSNVQETNEKLAPKIQGRLRRL 86
              ++     NE +AP +  +LR L
Sbjct: 703 VPKNNQPDLVNENIAPNLISKLREL 727


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
 Frame = -1

Query: 472 HKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 302
           H+T+ +Q    +         +A  +  ES L   N   ++    L ++N    K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684

Query: 301 EQSRQNIERTAEELRKA 251
           +   +NI+   E+LRK+
Sbjct: 685 DSLEKNIQTLKEDLRKS 701


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 262 LRKAHPDVEKNATALREKLQAAVQNTVQE 176
           L  AH D+E   T++RE+L++ +    +E
Sbjct: 267 LDSAHSDLELELTSIRERLESLILEKQEE 295


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 325 NGKAKEALEQSRQNIERTAEELRKAHPDVEKN 230
           N K KE  E++     +  EELR+A PD E++
Sbjct: 22  NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,309,817
Number of Sequences: 5004
Number of extensions: 39856
Number of successful extensions: 204
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -