Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B12
         (454 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    28   0.58 
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.3  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   2.3  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    26   2.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   4.1  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   5.4  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   5.4  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 377 HEHFSSYCRDYVNVTCGPTSA 439
           H H  S+CRD++ + C    A
Sbjct: 373 HSHLQSFCRDWLRIVCSSIQA 393


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = -1

Query: 424  TSHIDVVATITRKMFVKFXXXXXXXXXASAGDYSNFAYSVADPYTGDFKN 275
            T    V+   T +++ K            A D  N++ ++ +PYT DF++
Sbjct: 2820 TDSTAVLVMSTGELYTKLLNASINVTILDASDPGNYSNNIENPYTKDFED 2869


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 268 ESRLGDNVKGQYSLLESDGTRRTVDYAAGAE 176
           +S +GD++ G YS+LE+ G     D     E
Sbjct: 399 DSMVGDSIHGLYSILETSGAEIVGDIKRAQE 429


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 7  FSKRFLCSCKGSSRC 51
          +S+ FLCSC+G S C
Sbjct: 6  WSRNFLCSCRGFSVC 20


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  WESTEFSIIRESIGCGVGVRGGDER 127
           W+S  + II  +I  G+GV  GD R
Sbjct: 789 WQSGSYKIIVATIAFGMGVDKGDVR 813


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 220 SDGTRRTVDYAAGAEGFNAVVRKDPAL 140
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 220 SDGTRRTVDYAAGAEGFNAVVRKDPAL 140
           +  +  TVDYAAG+ G   +V   PA+
Sbjct: 54  ASSSTETVDYAAGSVGIATLVDAVPAI 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,478,962
Number of Sequences: 5004
Number of extensions: 22742
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)