Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_B12
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0649 - 16566815-16567392,16567491-16567623,16568000-165687...    29   2.3  
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390...    29   2.3  
01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375           29   2.3  
06_01_1123 + 9257674-9258126,9258205-9258972                           27   5.3  
06_03_0188 - 17691582-17692241                                         27   7.1  
11_01_0631 - 5063622-5063635,5065050-5065203,5065280-5065441,506...    27   9.3  

>05_03_0649 -
           16566815-16567392,16567491-16567623,16568000-16568765,
           16569242-16569260,16569320-16569367,16569401-16569506
          Length = 549

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 317 EVGVIAGAGDGHKGKNNDELHEHFSSYC 400
           ++G+  G G GH  + +D+L +  S +C
Sbjct: 20  QLGISGGGGGGHGARRDDQLVQECSGFC 47


>03_04_0167 +
           17936598-17936763,17938735-17938831,17938919-17939027,
           17939125-17939163,17939655-17939768,17939886-17939947,
           17940691-17940793,17942111-17942260,17942693-17942761,
           17942840-17942896,17942966-17943226,17946154-17946222,
           17946374-17946475,17947200-17947270,17947375-17947578,
           17947848-17947941,17948350-17948646
          Length = 687

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 197 DRPASTVRLQQRVLTLHVVSQSALHLVLEVARVRIRDAVCEVGV 328
           D+  S   LQ  ++ L   +QS+L ++ +   VR RD+ C V +
Sbjct: 206 DQKRSNDALQMELMRLKEQTQSSLKVIQKFYDVRCRDSECSVNI 249


>01_01_1210 + 9749166-9749358,9750783-9751110,9752171-9752375
          Length = 241

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +2

Query: 212 TVRLQQRVLTLHVVSQSALHLVLEVARVRIRDAVCEVGVIAGAGDGHKGKNNDELHEH 385
           TV      L+ +  SQ   H V    ++ +   +C VGV+      H G +   LHEH
Sbjct: 177 TVMTSLVALSFYGASQIKFHWVERYDKILVGSVLCLVGVLTYVFHHHDG-DEHSLHEH 233


>06_01_1123 + 9257674-9258126,9258205-9258972
          Length = 406

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 29/95 (30%), Positives = 41/95 (43%)
 Frame = +2

Query: 113 GGDERSSGD*SRVLPDHSVEAFGSGGVVDRPASTVRLQQRVLTLHVVSQSALHLVLEVAR 292
           GG+    GD  R  P  + EA  SG  VD  A+ V   +R       S SA+ ++L    
Sbjct: 294 GGEWDKGGDCRRTRPTAASEARMSGLDVDFHAAQVEEFRRAEAAAAASGSAVRMLL---- 349

Query: 293 VRIRDAVCEVGVIAGAGDGHKGKNNDELHEHFSSY 397
               DA     ++A A DGH  +     HE+ + Y
Sbjct: 350 ---MDAT--AAMVARA-DGHPSRYGHWAHENVTLY 378


>06_03_0188 - 17691582-17692241
          Length = 219

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 279 RTRWRADWETT*RVSTR-CWSLTVLAGRSTTPPEPKASTLWS 157
           R  WR    T    STR  WSL++     TTP  P A + WS
Sbjct: 146 RLHWRRH-ATPWPSSTRNAWSLSLCQQWHTTPRPPSAHSAWS 186


>11_01_0631 -
           5063622-5063635,5065050-5065203,5065280-5065441,
           5065657-5066633,5067502-5067523
          Length = 442

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 155 PDHSVEAFGSGGVVDRPA 208
           P H VE  GS G++DRPA
Sbjct: 389 PGHKVEMNGSFGMMDRPA 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,187
Number of Sequences: 37544
Number of extensions: 186935
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)