Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_B04
(393 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 30 0.11
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 27 1.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 27 1.4
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 1.8
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 2.4
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 2.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 3.2
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 25 3.2
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 4.2
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 4.2
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 25 5.5
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 5.5
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 25 5.5
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide... 25 5.5
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ... 25 5.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 7.3
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc... 24 7.3
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 24 7.3
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 24 9.7
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 24 9.7
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 30.3 bits (65), Expect = 0.11
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 195 YKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKED 61
Y S Y+ EK+T++D + FA K R FE+ + +D
Sbjct: 372 YTSLSRYLSKSEKETSSDKTKESKFAAKKRDFELSRFDYYSYMQD 416
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.6 bits (56), Expect = 1.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Frame = -1
Query: 225 IPKTAEETIDYKSKELYIDNIEKDTTA--------DAVTKITFAPKLRTFEMDIMEE 79
+ +TA++ K K+ + DN+ + + D TKITF P L F MD +++
Sbjct: 223 VVETADKERMKKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDD 279
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 245 ANDTRTLSPSSVYLHSTSVAFKDSGSTNFTSVVTNSGASD*IYRP 379
+ +T SPS++ HST + ST GAS Y P
Sbjct: 14 SENTNQASPSTIQSHSTQPVLSNDHSTKVNDYEGKEGASSNGYDP 58
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 1.8
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 221 GMGMIRLLANDTRTLSPSSVYLHSTSVAFKDSGSTNFTSVVTNSGA 358
G G ++ + +SV T++ +GST TS+VT+SG+
Sbjct: 688 GSGSNSIVTETVDVPTTTSVNYGYTTITTGWTGSTTLTSIVTHSGS 733
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 67 FYTHFFHNVHFKGPEFWRKS-YLSNSICSGVLFNIINVQL 183
FY+ F +N+H++G + S ++ + C ++ I NV +
Sbjct: 897 FYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVTI 936
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 2.4
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = -1
Query: 324 VDPESLKATDVEWRYTEEGDKVRVSLASSRIIPIPKTAEETID-YKSKELYIDNIEKDTT 148
VD E + E +G+ V + ++ + I K + D Y S++ Y D +EKD
Sbjct: 93 VDGEGSDESSSEEEEDSDGELVTPEVDAAILRMIVKIRNKDPDLYDSQQKYFDEVEKDVQ 152
Query: 147 ADAVTKITF 121
+K F
Sbjct: 153 GSLKSKDGF 161
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = -1
Query: 270 GDKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMD 91
G ++RV S+ + + T+ D+ E+ + + + T + +IT PK
Sbjct: 463 GHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQS 522
Query: 90 IMEEMGIKED 61
MGI +D
Sbjct: 523 NKPVMGIVQD 532
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 25.4 bits (53), Expect = 3.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 266 SPSSVYLHSTSVAFKDSGSTNFTSVVTNSGAS 361
+PSS + ST++ + +T+FT+ +N G S
Sbjct: 124 NPSSTFDMSTNLFNSKNANTSFTNAFSNEGIS 155
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.0 bits (52), Expect = 4.2
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -1
Query: 273 EGDKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEM 94
+GD+ S ++P+ +E D+ S +N + TA+A+T R +
Sbjct: 582 KGDQSEDSNDHIEVVPVASAHDEDDDWNSDSDNDENNVEIVTAEAMTLAQDIASRRKSKA 641
Query: 93 DIMEE 79
D+++E
Sbjct: 642 DLIDE 646
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.0 bits (52), Expect = 4.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 243 WPMTLVPYLLLQCISILHQ 299
WPMTLV L C+ I+ Q
Sbjct: 227 WPMTLVERLCRSCVLIVGQ 245
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 5.5
Identities = 11/47 (23%), Positives = 25/47 (53%)
Frame = -1
Query: 267 DKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKI 127
D+V+ S+++S + + +E +S LY++ +K VT++
Sbjct: 100 DRVKHSVSNSCKLHLSLQGQEAAQLRSDSLYLEASDKRDLTSLVTRV 146
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 5.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +1
Query: 43 TFGGNPILFYTHFFHNVHFKG-PEFWR---KSYLSNSICSG 153
TF +PI ++F+ + G P + YL+NS+CSG
Sbjct: 433 TFTDSPIYLISYFYDRMISLGMPSTFTIEDMKYLANSVCSG 473
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = -1
Query: 210 EETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKEDRV 55
EET DY ++YI + K+ + V +A + ++ + E G+ + +
Sbjct: 272 EET-DYLRDKIYIPKVYKEISGKRVMVTEWADGIPLYDQTALSEAGMSKKEI 322
>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 24.6 bits (51), Expect = 5.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +1
Query: 100 KGPEFWRKSYLSNSICSGVLFNIINVQLFTLVINCFFGCFRNGYDSTAGQ*HSY 261
K P+ + K YL N + + L N NV L V+ + Y+ G+ SY
Sbjct: 246 KSPDSFDKQYLRNWLTANNLANKPNVSLPEDVVEATRRKYVEAYEMITGKKWSY 299
>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 202 CFFGCFRNGYDSTAGQ*HSYLISFFSVSPFY 294
C + CF+ G ++ + + HS L + + P Y
Sbjct: 236 CIYSCFKYGSNAYSHEPHSQLRNLQLLGPLY 266
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.2 bits (50), Expect = 7.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 230 MIRLLANDTRTLSPSSVYLHSTSVAFKDSGSTNF-TSVVTNSGA 358
+I L + + + SS ++ T+ + SGS F T++ T SG+
Sbjct: 626 LISTLTSQQISSNKSSEFVGQTTTEYTTSGSVGFTTTLATQSGS 669
>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 284
Score = 24.2 bits (50), Expect = 7.3
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = -1
Query: 189 SKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKE 64
S++ Y D +E+ + +TK+ P+L+ I E+ +++
Sbjct: 85 SQQTYQDLVEQQGLDEVITKVLSIPRLKLKYKTIREKCELRD 126
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 210 EETIDYKSKELYIDNIEK 157
EET D+K++E++ IEK
Sbjct: 674 EETTDFKNQEVFKQTIEK 691
>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 773
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Frame = +2
Query: 233 IRLLANDTRTLS--PSSVYLHS-TSVAFKDSGSTNFTSVVTNS 352
+RL +N+ + P + ++S T+ + SGST+F++ VT+S
Sbjct: 186 VRLASNEASGTNNNPKEIEMNSDTTSSVPKSGSTSFSANVTSS 228
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 23.8 bits (49), Expect = 9.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 221 GMGMIRLLANDTRTLSPSSVYLHSTSV 301
G+ I L+ ++R+ PS++ LHS V
Sbjct: 218 GLDCIYLIGTESRSEKPSALRLHSGDV 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,522,072
Number of Sequences: 5004
Number of extensions: 29444
Number of successful extensions: 104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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