Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A24
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   4.3  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   9.9  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 329  LLLCRFLITESRVVLNLLKSQNSMFFIET 243
            +LL   L+ E  + + LLK +NS+FF  T
Sbjct: 984  ILLSYMLLPECDIDVQLLKKRNSLFFPST 1012


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -2

Query: 389 IILPSKDRLKXCFTEYDVLLLLLCRFL-ITESRVVLNLLKS 270
           +I  S++ +K  F    ++LL  C F+  T SR+V+NL++S
Sbjct: 146 LIRISRNCIKLLFKN-SLVLLAACYFMNTTPSRLVINLIRS 185


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 157  INTMHCVIYIFSNFTLQSCQF 219
            +  M C I++ S F+LQS QF
Sbjct: 1221 LEAMICAIFLDSGFSLQSLQF 1241


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 352 KHXFNLSFDGRIINFY*T*GIVSNS 426
           KH F+ S +  +INF  + GI++N+
Sbjct: 767 KHNFSTSLEKTVINFENSNGIINNT 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,116
Number of Sequences: 5004
Number of extensions: 33791
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)