Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A24
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0014 - 27631971-27632374,27632486-27635402                       29   3.3  
12_01_0130 + 977181-977828                                             28   7.7  

>11_08_0014 - 27631971-27632374,27632486-27635402
          Length = 1106

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 666 LGRLALVTQEFSQISTGLSEALMNLKNDGNVEXXKEKXSGPGPHEIKT 523
           L  L  +   ++Q+S  +  +LM L+N   ++      SGP P EI T
Sbjct: 498 LTNLRALNLSYNQLSDSIPASLMKLENLQGLDLTSNGISGPIPEEIGT 545


>12_01_0130 + 977181-977828
          Length = 215

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 308 ITESRVVLNLLKSQNSMFFIETDLIS 231
           +TES++VLNLL+  NS F    D I+
Sbjct: 64  VTESQLVLNLLRGVNSRFTSTADNIA 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,743
Number of Sequences: 37544
Number of extensions: 165688
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)