Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_A23
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 219 3e-58
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 219 3e-58
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 28 1.2
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.9
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 26 6.6
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.8
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.8
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 219 bits (536), Expect = 3e-58
Identities = 106/240 (44%), Positives = 150/240 (62%)
Frame = -3
Query: 750 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGX 571
YN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 44 YNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGL 103
Query: 570 XXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 391
+ E +++GP F+ +LDVGL RT+TG+RVFGAM
Sbjct: 104 LVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAM 163
Query: 390 KGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 211
KGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QF
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQF 223
Query: 210 SKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELQERLGQTEALEQTQANIGREXKQNQ 31
S I G+ +D +E IY +A+ IR DPS +K + E+L+ TQ + E ++ +
Sbjct: 224 SGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERKER 283
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 219 bits (535), Expect = 3e-58
Identities = 106/240 (44%), Positives = 150/240 (62%)
Frame = -3
Query: 750 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGX 571
YN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+ AAY+TG
Sbjct: 44 YNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGL 103
Query: 570 XXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 391
+ E +++GP F+ +LDVGL RT+TG+RVFGAM
Sbjct: 104 LVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAM 163
Query: 390 KGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 211
KGA DGGL +PHS RFPG+D E+++ + E R +I+G HVAEYM L DDE+ +++QF
Sbjct: 164 KGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQF 223
Query: 210 SKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELQERLGQTEALEQTQANIGREXKQNQ 31
S I G+ +D +E IY +A+ IR DPS +K + E+L+ TQ + E ++ +
Sbjct: 224 SGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERKER 283
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -3
Query: 162 YKKAHEAIRADPSHKKKELQERLGQTEALEQTQANIGREXKQNQAKEGFLHQ 7
+++A EAI+ + +++ QE+L Q + QTQ + +Q A G L Q
Sbjct: 379 HQQALEAIQMAQAEQQRIAQEQLAQQQFQMQTQGQLAELEQQLLATRGQLEQ 430
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 549 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 641
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/85 (25%), Positives = 34/85 (40%)
Frame = -3
Query: 312 FNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRA 133
FNA R+ + A+ D E F + G A+ +IY+ + E IR+
Sbjct: 363 FNASGERSESANVETAQVW----DDREQYFFYEVFPNFNEGSIAEMKSSIYESSQEGIRS 418
Query: 132 DPSHKKKELQERLGQTEALEQTQAN 58
+ KKE + T L TQ +
Sbjct: 419 SSENNKKE-DDLKDSTGDLNTTQVS 442
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 267 AEYMRSLEQDDEDSFKRQFSKYIK 196
+EY+++L D SFK+ F K+I+
Sbjct: 948 SEYLQALSNLDSRSFKQFFQKFIQ 971
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 173 LKPSTRKPMKPSVRIHPTRRK 111
L PS RKP+ V++HP +K
Sbjct: 384 LLPSLRKPLLNFVKVHPPSQK 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,979
Number of Sequences: 5004
Number of extensions: 59023
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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