Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_A23
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679... 231 3e-61
01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626... 230 8e-61
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 31 0.98
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 5.2
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265... 28 6.9
>01_06_1660 +
38966999-38967001,38967685-38967757,38967841-38967923,
38968042-38968168,38968260-38968339,38968428-38968544,
38968711-38968845,38969046-38969215,38969300-38969417
Length = 301
Score = 231 bits (566), Expect = 3e-61
Identities = 109/217 (50%), Positives = 147/217 (67%)
Frame = -3
Query: 750 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGX 571
YNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 45 YNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGL 101
Query: 570 XXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 391
++Y VEP D FR LDVGL RTTTG RVFGA+
Sbjct: 102 LLARRVLKLRGLDQEYEGNIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGAL 160
Query: 390 KGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 211
KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ F
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 220
Query: 210 SKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELQE 100
S+Y+K G+ AD +EA+YKK H AIRADP+ K +E
Sbjct: 221 SEYLKKGIDADGMEALYKKVHAAIRADPTMAKSTKKE 257
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -1
Query: 155 KPMKPSVRIHPTRRKSYKKDSVKQKRWNKRKLTLAERXNRIKQKKASFIKR 3
K + ++R PT KS KK+ KR+N +KLT +Q+KAS ++R
Sbjct: 238 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLT-------YEQRKASLVER 281
>01_06_1659 +
38961637-38961639,38962361-38962433,38962531-38962613,
38962732-38962858,38962950-38963029,38963112-38963228,
38963393-38963527,38963714-38963883,38963970-38964087
Length = 301
Score = 230 bits (563), Expect = 8e-61
Identities = 108/217 (49%), Positives = 147/217 (67%)
Frame = -3
Query: 750 YNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGX 571
YNTPKYR + +NKD+T Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG
Sbjct: 45 YNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGL 101
Query: 570 XXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAM 391
++Y VEP D FR LDVGL RTTTG RVFGA+
Sbjct: 102 LLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGAL 160
Query: 390 KGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQF 211
KGA+DGGL++PHS KRF G+ + K+ ++++HR +I+G HVA+YMRS+ +++ + F+ F
Sbjct: 161 KGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHF 220
Query: 210 SKYIKLGVTADAIEAIYKKAHEAIRADPSHKKKELQE 100
S+Y+K G+ AD +E++YKK H AIRADP+ K +E
Sbjct: 221 SEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKE 257
Score = 34.7 bits (76), Expect = 0.080
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = -1
Query: 164 STRKPMKPSVRIHPTRRKSYKKDSVKQKRWNKRKLTLAERXNRIKQKKASFIKR 3
S K + ++R PT KS KK+ KR+N +KLT +Q+KAS ++R
Sbjct: 235 SLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLT-------YEQRKASLVER 281
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 31.1 bits (67), Expect = 0.98
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 179 MLLKPSTRKPMKPSVRIHPTRRKSYKKDSVKQKR 78
++++PS+R P P+ R PTRR D+ ++ R
Sbjct: 288 VVMRPSSRPPQPPASRTSPTRRVRVDADNARRPR 321
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 198 KLGVTADAIEAIYKKAH--EAIRADPSHKKKELQERLGQ 88
K+ +D +EA KA EA+ S K+KEL E LGQ
Sbjct: 630 KVSQLSDELEAYQTKAASLEAVMESASEKEKELVESLGQ 668
>05_01_0335 +
2652334-2652340,2652459-2652550,2652642-2653362,
2653456-2653533,2653658-2653684,2653871-2653938,
2654089-2654174,2654251-2654333,2654478-2654620,
2654709-2654810,2654906-2655199,2655282-2655404,
2655733-2656119
Length = 736
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 170 KPSTRKPMKPSVRIHPTRRKSYKKDSVKQKRWNKRKLTLAERXNRIK 30
K ++KP++PSV P K KK+ K+ +R+ T A+ ++ K
Sbjct: 36 KSKSKKPVEPSVESSPVEEKKPKKEPTNVKK--RRRDTEAKPKSKSK 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,473,699
Number of Sequences: 37544
Number of extensions: 390321
Number of successful extensions: 1057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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