Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A22
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   2.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   3.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   8.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   8.9  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    20   8.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 302 RSDCTTRKATVTFPRRACARSSGNWT 225
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
 Frame = -1

Query: 300 FRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXL--IQEIDTDGSGTVDFDEF 142
           F  YD+  NG +    L +                   I   DTDG G ++ +EF
Sbjct: 242 FSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNVNEF 296


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 206 NSMASSKRSTLTEAAPSTSTS 144
           NS ASS R     A  STSTS
Sbjct: 821 NSPASSPRYLSAAATSSTSTS 841


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 319 ERTQGSVQIVRQGRQRLHSHVEPARDPPGIGRAAD 215
           ER Q S +  R+ R+   +  E +RD  G GR+ +
Sbjct: 292 EREQKSYKNEREYREYRETSRERSRDRRGRGRSRE 326


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = -2

Query: 302 RSDCTTRKATVTFPRRACARSSGNWT 225
           +S C        F  ++C    G+WT
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWT 180


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/26 (26%), Positives = 10/26 (38%)
 Frame = -2

Query: 302 RSDCTTRKATVTFPRRACARSSGNWT 225
           +S C        F  + C    G+WT
Sbjct: 146 KSSCEIDVEYFPFDEQTCVMKFGSWT 171


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 5/12 (41%), Positives = 8/12 (66%)
 Frame = +1

Query: 106 EIDVYSPXHHLH 141
           ++ +Y   HHLH
Sbjct: 66  DLPIYQSHHHLH 77


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 257 RACARSSGNWTSS 219
           R C   SGNW S+
Sbjct: 6   RICIVGSGNWGST 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,009
Number of Sequences: 438
Number of extensions: 847
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)