Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   279   3e-76
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   3.4  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   3.4  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    26   3.4  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   4.4  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    26   4.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.7  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  279 bits (683), Expect = 3e-76
 Identities = 136/188 (72%), Positives = 151/188 (80%), Gaps = 1/188 (0%)
 Frame = -1

Query: 568 IDPIXALQAAMEGFQVTTMEEAAEVGQIFVTTTGNIDIICKEHLLRMKDDAIVCNIGHFD 389
           +DPI ALQAAM+GF+VTTMEEA + GQIFVTTTG  DII  EH   MK+D+IVCNIGHFD
Sbjct: 245 VDPINALQAAMDGFEVTTMEEAVKEGQIFVTTTGCRDIIRGEHFNEMKEDSIVCNIGHFD 304

Query: 388 CEIDVAWLDXNAKKV-NIKQHVDRYELENGNHIIVLAAGRLVNLGCATGHSSFVMSNSFT 212
            EIDVAWL  NAK V NIK  VDRYEL+NG HII+LA GRLVNLGCATGH SFVMS SFT
Sbjct: 305 VEIDVAWLKANAKDVVNIKPQVDRYELKNGRHIILLADGRLVNLGCATGHPSFVMSCSFT 364

Query: 211 NQVLAQIELWTKADTYPIGVHTLPKKLDEEVAALHLDHLGVKLTKLTPKQAKYIGVSREG 32
           NQVLAQI LWT   +YP+GVH LPKKLDEEVA LHL  LGVKLT LT  Q+ Y+G+  +G
Sbjct: 365 NQVLAQIALWTDNTSYPLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPVDG 424

Query: 31  PYKPEHXR 8
           PYK +H R
Sbjct: 425 PYKADHYR 432


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 216 NELDITKEEWPVAQPKLTSLPA 281
           NE ++TK + P+ +PKL   P+
Sbjct: 281 NERELTKHKLPIVKPKLAVFPS 302


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 430 MKDDAIVCNIGHFDCEIDVAWLDXNAKKVNIKQHVD 323
           + +D IVC  G    +ID   LD N    NI +H D
Sbjct: 408 VNEDDIVCFQGSLWTQIDKNALDYNDSADNIDEHKD 443


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 381 ISQSK*PMLHTIASSFILRRCSLHIMSIFPVVVTKI*PTS 500
           I   K   LH I   F LRR    ++  FP  V  I P S
Sbjct: 752 IDTEKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLS 791


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 564 IPSTHFRPQWKVFK*L---LWRKPLKWVKSLS-PRREILTLYAKNI 439
           + S   RPQWK F+ L   L R P KW   L+ P  ++   Y  N+
Sbjct: 136 LKSAFLRPQWKGFERLKAALGRLPGKWSFYLTFPTEKVDQSYQNNL 181


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -1

Query: 103 DHLGVKLTKLTPKQAKYIGVSREGPY 26
           DHLGV+ T L  ++ +Y  + ++ PY
Sbjct: 292 DHLGVESTVLDKRRLQYEKLLKDSPY 317


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 238  SFVMSNSFTNQVLAQIELWT-KADTYPIGVHTLPKKL 131
            SF++  S T+Q+ A   LW  KA+ Y     T+P  +
Sbjct: 1445 SFILETSGTSQLFAHQILWNMKANLYKDEAATVPDSI 1481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,310,274
Number of Sequences: 5004
Number of extensions: 45593
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)