Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A13
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    36   0.005
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    32   0.077
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.95 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.9  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    27   2.9  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   5.1  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 14/28 (50%), Positives = 22/28 (78%)
 Frame = -1

Query: 760 FKGAXSNVLRGTGGAFVLVLYDEIKKVL 677
           FKGA +N+LRG  GA VL +YD+++ ++
Sbjct: 290 FKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 20  QRFSIASKQSCQLXGSAHQFNKSQMSALHNQLQNHMXLHLIA 145
           Q+   A  Q+ QL G AH+FN+   + L N ++ H  L  +A
Sbjct: 79  QQAKAALTQARQLCGDAHKFNEDAKTDLRNSIKQHQQLKELA 120


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 300 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 193
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 42  NNHVNSXVQHTNLTSHKCQRYIISFKITXFYI**HNVYRSQKYTT*LCQTHS 197
           NN  N  V       H+C++++ + K   +Y+    +++ +KY T   Q  S
Sbjct: 504 NNDENYLVNQREDLIHQCKKFLHTLKTARYYLETVQLHQLKKYVTYFSQIWS 555


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 350 ITAAAQTM*CHIKKLIIFHFELRRDYI 430
           +T    T+   I  LI++HF LR+DY+
Sbjct: 95  VTVIPYTLFPGIMHLIVYHFFLRKDYV 121


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/53 (20%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 113 LQNHMXLHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 265
           + + + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 20  IDSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,396
Number of Sequences: 5004
Number of extensions: 52163
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)