Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A13
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019...    40   0.002
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887     32   0.43 
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309     30   1.7  
11_01_0021 - 143576-143932,144434-144667,144988-145066,145138-14...    29   3.0  
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733     28   7.0  

>05_06_0233 +
           26599068-26599466,26601214-26601829,26601871-26601917,
           26602101-26602268
          Length = 409

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = -1

Query: 760 FKGAXSNVLRGTGGAFVLVLYDEIKKVL 677
           ++GA SN+ R TG A +LVLYDE+KK +
Sbjct: 309 YRGALSNMFRSTGAAAILVLYDEVKKFM 336


>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
          Length = 380

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -1

Query: 760 FKGAXSNVLRGTGGAFVLVLYDEIKKVL 677
           FKGA +N+LR   GA VL  YD+++ V+
Sbjct: 343 FKGAGANILRAVAGAGVLAGYDKLQVVV 370


>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
          Length = 382

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 760 FKGAXSNVLRGTGGAFVLVLYDEIK 686
           FKGA +N+LR   GA VL  YD+++
Sbjct: 345 FKGAGANILRAIAGAGVLSGYDQLQ 369


>11_01_0021 -
           143576-143932,144434-144667,144988-145066,145138-145253,
           145717-145861,146048-146465,147206-147869
          Length = 670

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 98  ALHNQLQNHMXLHLIA*CVQKSKIHYIIMSNSLPLCKKK 214
           A HN L NH+  H     +  +K H+    ++LP  K K
Sbjct: 87  AFHNLLDNHLLHHFHTLLIHANKPHFDAFLSNLPFAKLK 125


>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
          Length = 329

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 760 FKGAXSNVLRGTGGAFVLVLYDEIKK 683
           F+G  +N+L G  GA VL  YD++ +
Sbjct: 286 FRGVGANILSGMAGAGVLAGYDQLHR 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,693,840
Number of Sequences: 37544
Number of extensions: 292720
Number of successful extensions: 368
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)