Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A11
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    29   0.59 
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    26   5.5  
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   5.5  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 801 QDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKLQA 691
           QDP + A       NPA  +++  NP + + I KL A
Sbjct: 548 QDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIA 584


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 659 AAFQVLVDPNLALDHGRPPMMTSDLINI 576
           A  Q LVDP LA D G  P    DL+ +
Sbjct: 375 ATCQSLVDPELADDEGANPTGLYDLVGV 402


>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = +1

Query: 337 IQVSIYNSQHFNIHKFFKSSDLLTVPLFDCLSMTK-NFR*QMKKNL-IALN---FSRSLN 501
           + V   N++H  +H   K + LLT+     +S+    F  ++ + + IALN   FS+SL 
Sbjct: 1   MDVDFANAKH-KLHCLLKKNFLLTIRFSSLVSIQYIPFSNRLYEIISIALNPCNFSKSLF 59

Query: 502 WYSTNIRSNIFYKQNLE 552
           W    I++++  K + +
Sbjct: 60  WLRKKIKNSVLLKTSFD 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,194
Number of Sequences: 5004
Number of extensions: 45850
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)