Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A11
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148...    53   3e-07
04_03_1036 - 21895764-21895817,21895928-21895975,21896051-218961...    38   0.007
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    28   7.6  

>02_01_0003 +
           13079-13610,14005-14312,14364-14549,14620-14707,
           14807-14887,14980-15044,15357-15497,15578-15694,
           15995-16237,16326-16383,18127-18224
          Length = 638

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 22/41 (53%), Positives = 31/41 (75%)
 Frame = -2

Query: 810 AAXQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKLQAK 688
           AA  DPE+ AA +DV +NPA+F ++Q NPK+  +IAK+ AK
Sbjct: 593 AAFGDPEVMAALQDVMNNPASFARHQANPKVGPIIAKMMAK 633


>04_03_1036 -
           21895764-21895817,21895928-21895975,21896051-21896154,
           21896624-21896721,21897838-21897916,21898039-21898102,
           21898176-21898294,21898434-21898686,21899273-21899279,
           21899956-21900013,21900300-21900353,21900863-21901055
          Length = 376

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -2

Query: 807 AXQDPEISAAFKDVTSNPANFIKYQNNPKIAAVIAKL 697
           A Q+P+I  A  D + NP N +KYQN+ ++  V  K+
Sbjct: 331 AFQNPKIQTAIMDCSQNPLNIVKYQNDKEVMDVFMKI 367


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 801 QDPEISAAFKDV-TSNPANFIKYQNNPKIAAVIAKLQAKLG 682
           +DP + +   ++ T +PA  IKY N+P+    I++    LG
Sbjct: 165 EDPAVKSIMDELETGDPAALIKYWNDPETFRKISQAMGPLG 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,299
Number of Sequences: 37544
Number of extensions: 236259
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)