Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A07
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    25   5.6  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    24   9.7  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    24   9.7  

>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 273 SIVDEHLRLGADRAHHQQHRKGNKNHRFEHFVIYTNHSTKACLINRRDH 419
           SI +EH R+G+D     + +   + H    + +    +   CL  R  H
Sbjct: 507 SIFEEHKRVGSDLHQDTEKKLHLEQHHLYGWCLRLTRTEAGCLRGRSSH 555


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 321 QQHRKGNKNHRFEHFVIYTNHSTK 392
           ++H  GN  +  + F+ Y NH  K
Sbjct: 459 KKHASGNNGYMLKDFINYLNHQDK 482


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 GADRAHHQQHRKGNKN 347
           G DR++H++   GNKN
Sbjct: 391 GDDRSYHKRRNTGNKN 406


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 309 RAHHQQHRKGNKNHRFEHFVIYTN 380
           R+HHQQ+  G+  H +  F+ + N
Sbjct: 454 RSHHQQNITGDLVHVYSDFLDFQN 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,438,717
Number of Sequences: 5004
Number of extensions: 21692
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)