Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A05
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical p...    27   9.6  

>U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical
           protein ZC204.10 protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/47 (31%), Positives = 28/47 (59%)
 Frame = -2

Query: 368 LKNLATLSLHILNFLPILSCLLNQILLMLFLVSR*INMFENSILIGT 228
           ++N+ +L LH++N   ILS   + ILL  FL ++ +N+     + G+
Sbjct: 185 IQNVRSLELHVVNLDYILSSNSSDILLYCFLSNKDLNLLMKQWIKGS 231


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 534 QAGLGRLIVPVPLICNSTMVFFEINFVNYSKFKNIMNLY 650
           Q  +  +++ VP+I    M+F  ++ VN   F N++N Y
Sbjct: 249 QIAIPLIVIFVPIIAG--MIFKALSIVNPQAFSNLLNFY 285


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 534 QAGLGRLIVPVPLICNSTMVFFEINFVNYSKFKNIMNLY 650
           Q  +  +++ VP+I    M+F  ++ VN   F N++N Y
Sbjct: 249 QIAIPLIVIFVPIIAG--MIFKALSIVNPQAFSNLLNFY 285


>Z74030-13|CAA98445.2|  336|Caenorhabditis elegans Hypothetical
           protein D1054.12 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 595 NTIVELQIKGTGTMSLPRPAW*YLVVLWYLYHTI 494
           NTI  L +    ++ +P+  +  L + WYLYHT+
Sbjct: 193 NTIPCLCLIFMFSLIIPQALYFVLSIFWYLYHTV 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,053
Number of Sequences: 27780
Number of extensions: 266621
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)