Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_A02
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa... 74 5e-15
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc... 74 5e-15
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 1.6
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 25 2.8
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 25 3.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 24 4.8
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 24 4.8
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 24 4.8
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 24 4.8
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 24 4.8
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 23 8.5
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 23 8.5
>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 5e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -1
Query: 220 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 74
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
S28|Schizosaccharomyces pombe|chr 3|||Manual
Length = 68
Score = 74.1 bits (174), Expect = 5e-15
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = -1
Query: 220 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 74
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 1.6
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 98 SFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGFI 226
S H+P ++ + N L + +++++R T Y+H K + I
Sbjct: 57 SIHMPAPFSSVVRNALKANPNSVSIRDITTHYYHFAEKMLHLI 99
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/45 (22%), Positives = 24/45 (53%)
Frame = -1
Query: 256 VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 122
+ I A +D+P + ++V+ + T + CT+VK+ + ++
Sbjct: 114 IQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 3.7
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 121 DGWSPQ*TRPSLEYTGPENQYGRVLSRHEQ 210
D S + P L T PE + GRVLS EQ
Sbjct: 503 DADSSEPASPVLMPTKPEKKKGRVLSETEQ 532
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 147 SSSLGRPAVRSSGT*KDRSVTETSSLFLNLNVKL 46
++S+ PAV SS T S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 24.2 bits (50), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 208 QERWVYPFWLVISSLIQLTHVHQSWRVSKSIGRPNSF 318
++ WV P L+ISS + L + +SK NSF
Sbjct: 117 RKTWVVPCMLLISSTLLLFSYNVDTWISKGSSYINSF 153
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 265 HVHQSWRVSKSIG 303
HVHQ WR+ IG
Sbjct: 234 HVHQGWRIMFGIG 246
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 193 LSRHEQERWVYPFWLVISSLIQLTHVHQSWRVSK 294
+S+ RWVYPF + S+L+ T +Q ++ K
Sbjct: 283 ISKDVLSRWVYPF-VPDSNLLNQTFSYQRHQIYK 315
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.2 bits (50), Expect = 4.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 165 WP*EPVRPSTFTTRARTLGLSILACNIE 248
WP +P + +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 141 SLGRPAVRSSGT*KDRSVTETSS 73
S G+PA +++ T D+ T TSS
Sbjct: 271 SFGKPAGQAASTATDKGTTTTSS 293
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 278 LWCTCVNCIKLDITSQN 228
L C C NC KL I S N
Sbjct: 105 LECVCWNCGKLKIDSSN 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,550
Number of Sequences: 5004
Number of extensions: 24755
Number of successful extensions: 74
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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