Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_pT_A02
(319 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 42 8e-05
03_01_0468 - 3612079-3612197,3612679-3612850 36 0.009
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 28 1.8
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 27 3.2
03_05_0052 - 20293197-20293310,20293938-20294024,20294133-202942... 27 4.2
01_06_0020 + 25630728-25631023,25631308-25631548,25631629-256317... 27 4.2
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 26 5.6
03_05_0871 + 28396964-28399843 26 7.4
02_02_0034 - 6246183-6246553,6246672-6249699 26 7.4
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287... 26 7.4
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825... 25 9.7
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 42.3 bits (95), Expect = 8e-05
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +2
Query: 35 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLALRTSTAEYFHDTSK 211
+QPP R ++ EDV++TDR+ VP D T + EL L L A + H K
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTPGAGAAHHLHHDGK 663
>03_01_0468 - 3612079-3612197,3612679-3612850
Length = 96
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +2
Query: 35 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL 166
++PP ++ EDV++++R+ VP D T + ELD HL L
Sbjct: 10 AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHL 53
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 27.9 bits (59), Expect = 1.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 26 NNLSQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPN-ELDLHLSTLA 169
NN + + + SED+ V+DR D T G PN E L+ S LA
Sbjct: 1453 NNPKEVGNIPEEIQHSEDIKVSDRELDTGDIDTDGSPNDEKSLNGSNLA 1501
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -3
Query: 218 QRSC-SCRESTRPYWFSGP 165
+RSC CR +T P W SGP
Sbjct: 667 RRSCVECRATTTPMWRSGP 685
>03_05_0052 -
20293197-20293310,20293938-20294024,20294133-20294270,
20295009-20295128,20295236-20295343,20296053-20296133,
20296216-20296456,20297010-20297305
Length = 394
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 280 SFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 101
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>01_06_0020 +
25630728-25631023,25631308-25631548,25631629-25631709,
25632109-25632216,25632329-25632448,25632806-25632943,
25633064-25633150,25633802-25633915
Length = 394
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 280 SFGARVLIVLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVK 101
S RVLI L D PN + +GR+G G+ V + F+ + +I+R+++
Sbjct: 318 SGATRVLITTDVSLVINYDLPNNRELYIHRIGRSGRFGR-KGVAINFVKKEDIRILRDIE 376
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 26.2 bits (55), Expect = 5.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 256 VLSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 86
V++ QAK+DK N+L+ ++L + + + E + ET + ++ K +RD
Sbjct: 92 VINPDKQAKLDKANILSDAARLLAELRGEAEKLKESNEKLRETIKD-LKVEKNELRD 147
>03_05_0871 + 28396964-28399843
Length = 959
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 157 EYTGPENQYGRVLSRHEQERWVYPFWLVISSLIQLTHVHQSWRVSKSIGR 306
E+ PE+ + + + + ++ ++ SL L H++ +WRVS I R
Sbjct: 656 EFPFPESNFPLLQTLDIRGTFIRKLPGILESLDTLRHIYLNWRVSLDIRR 705
>02_02_0034 - 6246183-6246553,6246672-6249699
Length = 1132
Score = 25.8 bits (54), Expect = 7.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 26 NNLSQP-PSFTFRFKKSEDVSVTDRSF--HVPDDLTAGLPNELDLHLSTLAL 172
NNLS P P F + + + S +P D+ LPN L LST+ L
Sbjct: 352 NNLSGPVPESIFNMSSLRYLEMANNSLIGRLPQDIGNRLPNLQSLILSTIQL 403
>02_01_0395 +
2869748-2870045,2870450-2870571,2871700-2871777,
2871886-2872470,2872917-2873657,2873794-2873868
Length = 632
Score = 25.8 bits (54), Expect = 7.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 104 HVPDDLTAGLPNELDLHLSTLAL 172
HV DD+ A P+++D H L L
Sbjct: 108 HVQDDVAASSPDQMDHHTKDLLL 130
>04_04_0486 -
25582072-25582283,25582366-25582420,25582503-25582559,
25582674-25582765,25583148-25583280,25583357-25583434,
25583531-25583676,25583702-25583749,25583804-25584011,
25584154-25584220,25584441-25584499
Length = 384
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +2
Query: 50 FTFRFKKSEDVSVTDRSFHVPDDL--TAGLPNELDLHLSTLALRTSTAEYFHDTSKNVGF 223
F RF+ D+++ F DL T+ S + EY H + N GF
Sbjct: 184 FPMRFRDDTDLAIASSFFQELQDLGSTSSFSRAPRCSWSPIPPPELRGEYVHHLTTNGGF 243
Query: 224 IHFGL 238
+ F +
Sbjct: 244 VSFDI 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,610,588
Number of Sequences: 37544
Number of extensions: 163065
Number of successful extensions: 409
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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