Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A01
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    28   1.8  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    26   7.1  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    25   9.4  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/78 (28%), Positives = 37/78 (47%)
 Frame = +1

Query: 190 SYQLSNTIGQLLARMEGRG*DNIGDKFALTLQPNTHQNCTIEXXXXXXXXXXNGAQCEKQ 369
           S+ L N++  L+ ++E  G D + DKF   L PN  ++  I                 KQ
Sbjct: 568 SFALYNSLIMLIDKLEVLGFDIVSDKFKGLLTPNLFESLFI--LNLERLKAAKSMDHMKQ 625

Query: 370 N*INFNILFWNHL*NYTS 423
           N   F++ F N+L ++T+
Sbjct: 626 N--TFDMEFINYLSDFTN 641


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 530 YPNDYPKESNSN 495
           +PNDYPKE+N +
Sbjct: 165 FPNDYPKEANKD 176


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 162 NRSVKEVRVANMTGSEVNDHVSLIC*MVFIRCVILPRTKVMSRS 31
           ++S  +   A    S +N   SLIC  +++ CV+L + KV+ +S
Sbjct: 198 SKSCTDKLAAKQYLSILNSQTSLICEPIYLSCVVLYK-KVIVKS 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,044
Number of Sequences: 5004
Number of extensions: 55045
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)