Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_pT_A01
         (796 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34060-1|AAA35628.1|  793|Homo sapiens cadherin-8 protein.             34   0.51 
BC113416-1|AAI13417.1|  799|Homo sapiens cadherin 8, type 2 prot...    34   0.51 
AB074170-1|BAE45735.1|  348|Homo sapiens putative protein produc...    34   0.51 
AB035305-1|BAA87419.1|  799|Homo sapiens cadherin-8 protein.           34   0.51 

>L34060-1|AAA35628.1|  793|Homo sapiens cadherin-8 protein.
          Length = 793

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 110 LTSEPVMFATLTSFTDLFNTI-MTTGNTAISLVTPLDSCLHVWRVEARIISETNSH*HYN 286
           +TS P+ F+ +   TDL     +   +  I+L TPLD  L VW     I +E  +H   +
Sbjct: 413 ITSSPIRFS-IDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQIS 471

Query: 287 PIPIKI 304
            +P+ I
Sbjct: 472 RVPVAI 477


>BC113416-1|AAI13417.1|  799|Homo sapiens cadherin 8, type 2
           protein.
          Length = 799

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 110 LTSEPVMFATLTSFTDLFNTI-MTTGNTAISLVTPLDSCLHVWRVEARIISETNSH*HYN 286
           +TS P+ F+ +   TDL     +   +  I+L TPLD  L VW     I +E  +H   +
Sbjct: 420 ITSSPIRFS-IDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQIS 478

Query: 287 PIPIKI 304
            +P+ I
Sbjct: 479 RVPVAI 484


>AB074170-1|BAE45735.1|  348|Homo sapiens putative protein product
           of Nbla04261 protein.
          Length = 348

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 110 LTSEPVMFATLTSFTDLFNTI-MTTGNTAISLVTPLDSCLHVWRVEARIISETNSH*HYN 286
           +TS P+ F+ +   TDL     +   +  I+L TPLD  L VW     I +E  +H   +
Sbjct: 236 ITSSPIRFS-IDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQIS 294

Query: 287 PIPIKI 304
            +P+ I
Sbjct: 295 RVPVAI 300


>AB035305-1|BAA87419.1|  799|Homo sapiens cadherin-8 protein.
          Length = 799

 Score = 34.3 bits (75), Expect = 0.51
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 110 LTSEPVMFATLTSFTDLFNTI-MTTGNTAISLVTPLDSCLHVWRVEARIISETNSH*HYN 286
           +TS P+ F+ +   TDL     +   +  I+L TPLD  L VW     I +E  +H   +
Sbjct: 420 ITSSPIRFS-IDRHTDLERQFNINADDGKITLATPLDRELSVWHNITIIATEIRNHSQIS 478

Query: 287 PIPIKI 304
            +P+ I
Sbjct: 479 RVPVAI 484


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,739,160
Number of Sequences: 237096
Number of extensions: 1789392
Number of successful extensions: 2465
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2465
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)