Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_P17
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical pr...    27   4.5  

>Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 151 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 32
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


>Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 151 NFFVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTA 32
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


>Z73104-2|CAA97434.1|  479|Caenorhabditis elegans Hypothetical
           protein K08D8.3 protein.
          Length = 479

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 145 FVSILNDHTTSVNIKETSYLQLFTEKNQKLFHILSSTAMF 26
           F    N H T+ N + T  L  FT +NQ  + +L  +A++
Sbjct: 151 FAMAPNTHLTTFNAETTVGLVAFTLRNQSHYPLLRQSAVY 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,507,484
Number of Sequences: 27780
Number of extensions: 93739
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)